Transcript Information: S_Transcript_12253.p1


Annotated TAIR IDAT3G62140.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP30, N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 proteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:23007277-23008626 | Forward length=214
E-Value4.6E-67
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.484518761471
Replicate 215.857629994464
Replicate 313.255716560088
Condition 2: 8 Hour
Replicate 118.469311256803
Replicate 222.271974315442
Replicate 319.793287061768
Condition 3: 24 Hour
Replicate 117.456402432216
Replicate 216.2896145705
Replicate 316.777163465903


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12253.p1 GENE.S_Transcript_12253~~S_Transcript_12253.p1 ORF type:complete len:224 (+),score=74.66,Nefa_Nip30_N|PF10187.5|1.9e-16 S_Transcript_12253:332-1003(+)
ATGGCCGAGGATCTTCCTCCTCCCATCAGATTGATGAATTTCGTGTCTCAGGAACAGTTGGATGAAGCAAAGAGAACCAGGGGTGAAAGAGTTGAGGACGGCACTGCTCAGAGAGATCGTCCTCTCTATGAGATTTTGCAGGAGAACAAGGACAAGAAAGATGCTGAGTTCAACGAAAGATTCAAGCATCGACCTCCCAAGGCTTTGGATGAGGATGAGACTGAATTCCTAGAAAAATTGGAGACGTCAAGGAAAGAATATGAACAGCATATTGCAGATGAAGAAACTCAAGAACTAAGGAGATTCCAGGCAGCAGTGGCGGCACAGTCTATGGTAATGCAAGAGGTGAAAGAAACTCCTGTTTCTGATGTTCAGCAGGAGAAGAGGACAGTGGGAAAGAAGAATAAGCCTTTTGAGCCATTGGGTATGATTATAAAAGTGAAGCCATCAGCCAAGAAAACTAGAGTGGATCCATCACCAGTGCAGCCGTCTGGAGCTGTGGTAAATCATGCTGTGGAGACTCAACAATGTTCAAGCCCTTCGGAAACTCCAAGTGGTGGTAGAGAGGTTTGTCAGGAACCATTAAAGAATTCTGACAGTAATAGGGAAAATACTCATAATGTCGCAATGAATGGTCTCGTTTCATACAGTGATGAAAGTGACGGTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12253.p1 GENE.S_Transcript_12253~~S_Transcript_12253.p1 ORF type:complete len:224 (+),score=74.66,Nefa_Nip30_N|PF10187.5|1.9e-16 S_Transcript_12253:332-1003(+)
MAEDLPPPIRLMNFVSQEQLDEAKRTRGERVEDGTAQRDRPLYEILQENKDKKDAEFNERFKHRPPKALDEDETEFLEKLETSRKEYEQHIADEETQELRRFQAAVAAQSMVMQEVKETPVSDVQQEKRTVGKKNKPFEPLGMIIKVKPSAKKTRVDPSPVQPSGAVVNHAVETQQCSSPSETPSGGREVCQEPLKNSDSNRENTHNVAMNGLVSYSDESDGD*

Click here to download the sequence:
Link to NCBI Protein BLAST