Transcript Information: S_Transcript_122612.p1


Annotated TAIR IDAT1G13040.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:4447647-4449200 | Forward length=517
E-Value6.5E-203
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9842880927909
Replicate 24.6581705399743
Replicate 34.106252179842
Condition 2: 8 Hour
Replicate 14.1750284306095
Replicate 24.8093033544134
Replicate 34.7459468755813
Condition 3: 24 Hour
Replicate 14.5702347417942
Replicate 23.7845520290638
Replicate 34.3085642073999


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_122612.p1 GENE.S_Transcript_122612~~S_Transcript_122612.p1 ORF type:complete len:521 (+),score=63.81,PPR_2|PF13041.2|6.2e-05,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|2.1e-05,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|5e-14,PPR_2|PF13041.2|2.3,PPR_2|PF13041.2|9.4e-15,PPR_2|PF13041.2|7.1e-14,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|8.5e-17,PPR_2|PF13041.2|4.4e-10,PPR_2|PF13041.2|1.9e-08,PPR_2|PF13041.2|9e-12,PPR_2|PF13041.2|0.0015,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.00045,PPR_1|PF12854.3|2.8e-11,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|0.00035,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|2.1e-09,PPR_1|PF12854.3|6.9e-08,PPR_1|PF12854.3|9.2e-07,PPR_1|PF12854.3|7.6e-06,PPR_1|PF12854.3|5.4e-08,PPR_1|PF12854.3|0.44,PPR|PF01535.16|6.5e-05,PPR|PF01535.16|3.5e+02,PPR|PF01535.16|0.36,PPR|PF01535.16|0.0015,PPR|PF01535.16|5.7e-08,PPR|PF01535.16|3.9,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|0.00015,PPR|PF01535.16|0.00023,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.0059,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|0.045,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|4.2e-05,PPR_3|PF13812.2|8.3e+02,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|7.4,RabGAP-TBC|PF00566.14|1.2,RabGAP-TBC|PF00566.14|0.038,RabGAP-TBC|PF00566.14|98,RabGAP-TBC|PF00566.14|0.068 S_Transcript_122612:501-2063(+)
ATGCATGATATGATTTGCAGTTTTGGCAAACATCGATCTGTCTATCGAGCTCTTATATCAAGATTTGTTAAAAGAGGAATGATCGATCAAGCGATTGAAACTTTTGATGAGATGGTTAACTCAAATTGTCGAGTATTCAGCATAGATTATAATCGATTTATCGGAGTTCTCATCAAGCATTCCCATCTTGACTTAGCTCACTACTATTACAACACAATGCAACCACAAGGATTTTCTTTGATTTCTTTTACGTATTCGAGGTATATATCTGCTCTGTGTAAGGTGAAGAATTTTCAGCTTATTGAGGTTCTTCTAGAAGACATGGAAAAGCTCGATTCTGTCCCAGACATATGGGCATATAATATTTATCTGAATTTGTTATGCCAGGAGAATAAATTAGACTTAGCTTTGAGCCTATTAGAAAACATGATTCATAAGGGAAGGACTCCTGATGTTGTAACATATACTGTGCTTATAAGTGGACTGTGCAAGGCAAGACGTTTTGACAATGCTGTTGAGGTTTGGCATACTATGTTAAAGAATGGAATTAGTCCAGATAGTAAAGCATGTAGGGCACTTGTTCTTGGTTTATGTGGTGCTGGTAAGGCTGATTTAGCTTATGAACTTGTAGTTGATATGATTAAAGTTGGAGCACAACTAGGCATATTGGTATATAATGCTCTGATTAGTGGGTTTTGTAAGATTGATCAGGTTGATAAAGCACTAGCTATTAAATCATACATGAAAAGTGATGGATGTGAGCTAGACCGTGTTACCTATAACATACTTTTGGGTTATTGTTGTGATCGACTTATGCTAACGGAAGCTGAGAAACTGATGGAAAAGATGGAAAGGAACGGAATGGAACCTGATTTATACAGCTATAACCAATTTCTTAAGGGTCTTTGTAGAGCTAACCGCTTGGACAAGGCTTATTTGTTGCTTGATGTAATGGAAGCCAAAGGATTGTGCGACACTGTCTCTTACAATACTATTATTAAGGGACTTTGCTATGCCCGACATACCAAAAGGGCTTACAAAGTTTTTGAGGAGATGTTTCGGAAAGGGATTGACCCAGACGTGGTGACATTTACCATCCTCGTAAAAGCTTTCCTTAGTGAAGGTAGCTCTGATATTGCAAAGAGACTTCTTGATCAGATGGAAGGAATGGGTATGTCTCCTGATCGTGTCTTATGTACCATAATTATTCATCACCTTTGTAAGATGGGCAAAATTGAGATGGCTCAAAATGTTTTTCATGACATGGTGGAGAGAGGGTTAACATCAGATGTAATATTATACAATGCTCTTATAAATGGTCTTTGCAAAACTTGTAGAATTAGTGAAGCAATGAGTTTGTACGAGAAAATGCAAAATGGAGGACCTTGTCCTGATGAATTGACTTTCAAACTGATAATTGGGGGGCTGATACGGGAGGACAAGCTATCAATGGCTTGTAGAGTGTGGGATCACATGATGGAAAAAGGCTTTACTTTAGATAGATCCGTTTCTGAAAGCCTAACTAGCGCCCTTCATTCAAAAGATGCCTCTTGGGAAAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_122612.p1 GENE.S_Transcript_122612~~S_Transcript_122612.p1 ORF type:complete len:521 (+),score=63.81,PPR_2|PF13041.2|6.2e-05,PPR_2|PF13041.2|0.00037,PPR_2|PF13041.2|2.1e-05,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|5e-14,PPR_2|PF13041.2|2.3,PPR_2|PF13041.2|9.4e-15,PPR_2|PF13041.2|7.1e-14,PPR_2|PF13041.2|0.0013,PPR_2|PF13041.2|8.5e-17,PPR_2|PF13041.2|4.4e-10,PPR_2|PF13041.2|1.9e-08,PPR_2|PF13041.2|9e-12,PPR_2|PF13041.2|0.0015,PPR_1|PF12854.3|0.018,PPR_1|PF12854.3|64,PPR_1|PF12854.3|0.00045,PPR_1|PF12854.3|2.8e-11,PPR_1|PF12854.3|0.099,PPR_1|PF12854.3|0.00035,PPR_1|PF12854.3|2.3e-05,PPR_1|PF12854.3|2.1e-09,PPR_1|PF12854.3|6.9e-08,PPR_1|PF12854.3|9.2e-07,PPR_1|PF12854.3|7.6e-06,PPR_1|PF12854.3|5.4e-08,PPR_1|PF12854.3|0.44,PPR|PF01535.16|6.5e-05,PPR|PF01535.16|3.5e+02,PPR|PF01535.16|0.36,PPR|PF01535.16|0.0015,PPR|PF01535.16|5.7e-08,PPR|PF01535.16|3.9,PPR|PF01535.16|4.1e-06,PPR|PF01535.16|0.00015,PPR|PF01535.16|0.00023,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.0059,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|0.045,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.014,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|4.2e-05,PPR_3|PF13812.2|8.3e+02,PPR_3|PF13812.2|0.07,PPR_3|PF13812.2|0.028,PPR_3|PF13812.2|0.0076,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|0.24,PPR_3|PF13812.2|0.01,PPR_3|PF13812.2|0.0071,PPR_3|PF13812.2|7.4,RabGAP-TBC|PF00566.14|1.2,RabGAP-TBC|PF00566.14|0.038,RabGAP-TBC|PF00566.14|98,RabGAP-TBC|PF00566.14|0.068 S_Transcript_122612:501-2063(+)
MHDMICSFGKHRSVYRALISRFVKRGMIDQAIETFDEMVNSNCRVFSIDYNRFIGVLIKHSHLDLAHYYYNTMQPQGFSLISFTYSRYISALCKVKNFQLIEVLLEDMEKLDSVPDIWAYNIYLNLLCQENKLDLALSLLENMIHKGRTPDVVTYTVLISGLCKARRFDNAVEVWHTMLKNGISPDSKACRALVLGLCGAGKADLAYELVVDMIKVGAQLGILVYNALISGFCKIDQVDKALAIKSYMKSDGCELDRVTYNILLGYCCDRLMLTEAEKLMEKMERNGMEPDLYSYNQFLKGLCRANRLDKAYLLLDVMEAKGLCDTVSYNTIIKGLCYARHTKRAYKVFEEMFRKGIDPDVVTFTILVKAFLSEGSSDIAKRLLDQMEGMGMSPDRVLCTIIIHHLCKMGKIEMAQNVFHDMVERGLTSDVILYNALINGLCKTCRISEAMSLYEKMQNGGPCPDELTFKLIIGGLIREDKLSMACRVWDHMMEKGFTLDRSVSESLTSALHSKDASWEN*

Click here to download the sequence:
Link to NCBI Protein BLAST