Transcript Information: S_Transcript_122625.p1


Annotated TAIR IDAT5G49540.1
Annotated Gene NameRab5-interacting family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:20104804-20105609 | Reverse length=114
E-Value1.6E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 151.050096708994
Replicate 245.235656577043
Replicate 345.120907776859
Condition 2: 8 Hour
Replicate 157.940683125795
Replicate 255.015049170649
Replicate 349.200730006466
Condition 3: 24 Hour
Replicate 145.063659024622
Replicate 240.766352898335
Replicate 345.526583297285


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_122625.p1 GENE.S_Transcript_122625~~S_Transcript_122625.p1 ORF type:5prime_partial len:159 (+),score=13.41,Rab5ip|PF07019.8|2.1e-19 S_Transcript_122625:1-477(+)
ATCTCACAGACCTGTTTACTTGACTTCCCAGTTACCAGTTTCGAATCCGATAGGCACACCCGGCTTACAGTCAACTCTTCCTCAGGACGCGACTCTGTTGGCATAAGAGAAGGCATGGCTGGAAACAGTGATTCTGGTGCGTCTAACAAGAAATCTGGTGACACCTTGAATGATGTGTCAATTTTCAATGCTGAAAATATGCAGAGTAACATGAAAGTCGTAACCTACAGCCGGACATTCTTGTCCATTATTGGTGGAGTCATTGCAGGGATTTTAGGATTTACTGGACTTACCGGGTTTATCTTTTATCTTCTGGTTATGGCCGTTACTTCAGTGGGTCTGACAGCCAAGGCTAAATTCTCAGTTCATTCATACTTTGATAGCTGGAACCGGGTGTTACTTGATGGTTTTCTTGGCGGGCTTATGTCGTTCGTGCTGTTTTGGACATTTGCTTATGATATTGTGCATATATTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_122625.p1 GENE.S_Transcript_122625~~S_Transcript_122625.p1 ORF type:5prime_partial len:159 (+),score=13.41,Rab5ip|PF07019.8|2.1e-19 S_Transcript_122625:1-477(+)
ISQTCLLDFPVTSFESDRHTRLTVNSSSGRDSVGIREGMAGNSDSGASNKKSGDTLNDVSIFNAENMQSNMKVVTYSRTFLSIIGGVIAGILGFTGLTGFIFYLLVMAVTSVGLTAKAKFSVHSYFDSWNRVLLDGFLGGLMSFVLFWTFAYDIVHIF*

Click here to download the sequence:
Link to NCBI Protein BLAST