Transcript Information: S_Transcript_123036.p1


Annotated TAIR IDAT5G39980.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16001036-16003072 | Reverse length=678
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.5925090627081
Replicate 24.1977873936864
Replicate 34.0802513459293
Condition 2: 8 Hour
Replicate 18.3351451829502
Replicate 27.3252955722999
Replicate 37.7026292967853
Condition 3: 24 Hour
Replicate 14.9618171940288
Replicate 24.111576436417
Replicate 34.0176707901955


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_123036.p1 GENE.S_Transcript_123036~~S_Transcript_123036.p1 ORF type:complete len:678 (+),score=140.43,PPR_2|PF13041.2|6.6e-11,PPR_2|PF13041.2|0.0003,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|2.4e-14,PPR_2|PF13041.2|6.1e-10,PPR_2|PF13041.2|8e-09,PPR_2|PF13041.2|6.4e-13,PPR_2|PF13041.2|2.6e-14,PPR_2|PF13041.2|2e-06,PPR_2|PF13041.2|6.6,PPR_2|PF13041.2|3.2e+02,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|0.0071,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|21,PPR|PF01535.16|0.15,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.87,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|9.2e-05,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.22,PPR|PF01535.16|4.7,PPR|PF01535.16|0.0087,PPR|PF01535.16|0.0068,PPR|PF01535.16|4.6,PPR|PF01535.16|39,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.00054,PPR_1|PF12854.3|7.5e-07,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.0079,PPR_1|PF12854.3|9e-07,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|97,PPR_3|PF13812.2|0.25,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|0.041,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.65,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.049,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|17,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|68,PPR_3|PF13812.2|4e+03,Clathrin|PF00637.16|2.4e+03,Clathrin|PF00637.16|2.6e+02,Clathrin|PF00637.16|33,Clathrin|PF00637.16|2.5,Clathrin|PF00637.16|1.4e+03,Clathrin|PF00637.16|0.057,ECSIT|PF06239.7|1.6,ECSIT|PF06239.7|2.6e+02,ECSIT|PF06239.7|8.4,ECSIT|PF06239.7|31,ECSIT|PF06239.7|1.6e+02,ECSIT|PF06239.7|8.7,TPR_12|PF13424.2|11,TPR_12|PF13424.2|4.1,TPR_12|PF13424.2|1.1e+03,TPR_12|PF13424.2|8e+02,TPR_12|PF13424.2|71,TPR_12|PF13424.2|96,TPR_12|PF13424.2|8.5e+03 S_Transcript_123036:94-2127(+)
ATGGAACAAATTTGTTTCAGAGCTTCATCTAGGATGATTGATACTAGTCTTTTCTTAAAGGTGGAAAGTTCTTCTGTTCTTGCAATCACACCCTTCCAAAGAATTCCCAATAGAATTCCTCATTACCCTCTCTCAAAAATCTCAGCTTCATATTCCAAAGACATATGGACCAACCCATCATCATCATCATCATTAACATCGTCAACCCACCAACGGCATGGCAGAAACCAGCTTCAAAGAAGCACTACAACAACTACATACTTAGACCACAGCATAGACATGGAAGACCTGCTAAAATCAATTGCCCAAACAGCCAATGAACAAGAACTCTTTGCCCTTTTATCCCCATACAAAAACAGGCAACTTTCAGTTCGTTTCATGGTATCCCTCCTTTCTCGCGAACCCGACTGGCAAAGATCACTTGCCTTGCTTGATTGGATTAATGAGGTTGCTATTTATTCCCCATCTGTGTTTGTTTACAATGTGGTTATTCGTAATGTGCTTCGAGCCAAGCAGTGGGTTGTTGCACACGGCCTGTTCGATGAAATGCGCCAAAGAGCTTTGGCTCCTGACAGGTATACTTACTCTATGCTCATTACACATTTTGGGAAAGAGGGTATGTTTGATTCTGCCTTGTCTTGGTTGCAAAAGATGGAACATGATCGAGTTTCGGGTGATCTTGTTTTGTACAGTAATTTGATTGAGTTGTCTAGGAAGTTGTGTGATTATACTAAGGCAATATCTTTGTTCTCTAGGCTGAAGAGGTCTGGCATTAGGCCTGACCTTGTTGCTTATAACACCATGATTAATGTGTTTGGGAAAGCTAAGCTCTTTCGTGAGGCGAGGCACTTGGTGAAAGAGATGAGGGAAAATGGTGTTGAACCAGATACTGTTAGTTACTCTACTCTTTTGAATATGTATGTGGAGAATCACAAGTTTGTTGAGGCATTGTCATTGTTTTCTGAGATGAATAAGACCAAATGTGGGCTTGATCTTACTACTTGTAATATTATGCTTGATGTTTATGGGCAGCTTGATATGGCTAAAGAGGCTGATAGGCTTTTTTGGAGCATGAGGAAGATGGGTATTGACCCTAATGTAGTTAGTTATAATACCCTTTTGAGGGTATATGGAGAAGCTGAGCTTTTTGGGGAAGCTATACATCTTTTTCGGTTGATGCAGAAGAAGGACATTGAACAAAATGTTATTACTTACAATACTATGATTAAGATATATGGGAAGTCTCTTGAGCATGAGAAAGCTGGAAACTTGGTGCAAGAGATGCAGAAAAGAGGAATTCAACCTAATGCAATTACATACTCGACGATAATTTCTATATGGAGTAGGGCAGGGAAGTTGGACCGTGCAGCGATGCTGTTTCAAAAGCTTAGGAGTTCTGGGGTTGAGATTGATCAAGTTCTGTATCAAACTATGATAGTCGCTTATGAGAGAGCAGGTTTAGTAGCTCATGCAAAGAGGTTGCTCCATGAGCTTAGGTGCCCTGACAATATCCCCCATGACACTGCCATTGCTATTCTTGCAAGAGCAGGCCGAATAGAAGAAGCCACATGGGTTTTCAGACAGGCATTTGATGCTGGGGAAGTGAAGGATATCTCCGTTTTCCAGTGTATGATTGAACTCTACTCAAGACACAGGAAATATACAAATGTCATAGAAGTCTTTGAGAAGATGAGAGGAGCAGGATATTTCCCAACTTCAAATGTCATTGCTCTTTCTCTGAACGCCTATGGAAAGGTTAGGGAGTTTGAGAGGGCTGATATGGTGTATCGAGAGATGCAAGAAGAGGGGTGTATTTTCCCTGATGAAGTCCATTTCCAGATGTTAAGTCTGTATGGTTCAAGAGGTGACTTCAAGGCTGTGGAGTCACTGTTTGAAAAGCTGGATTCAGATCCCAATGTAAACAAGAAGGAGCTTCATCTTGTTGTTTCAAACATATATGAAGGAGCAAATAGACTCAATGATGCCGCTAAAGTCATCAACAAGATGTCTGAGAAAGGTATTTTGAGATATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_123036.p1 GENE.S_Transcript_123036~~S_Transcript_123036.p1 ORF type:complete len:678 (+),score=140.43,PPR_2|PF13041.2|6.6e-11,PPR_2|PF13041.2|0.0003,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|2.4e-14,PPR_2|PF13041.2|6.1e-10,PPR_2|PF13041.2|8e-09,PPR_2|PF13041.2|6.4e-13,PPR_2|PF13041.2|2.6e-14,PPR_2|PF13041.2|2e-06,PPR_2|PF13041.2|6.6,PPR_2|PF13041.2|3.2e+02,PPR_2|PF13041.2|0.16,PPR_2|PF13041.2|0.0071,PPR_2|PF13041.2|1.3e+03,PPR_2|PF13041.2|21,PPR|PF01535.16|0.15,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.87,PPR|PF01535.16|1.2e-07,PPR|PF01535.16|9.2e-05,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|5.4e-05,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|0.00022,PPR|PF01535.16|0.22,PPR|PF01535.16|4.7,PPR|PF01535.16|0.0087,PPR|PF01535.16|0.0068,PPR|PF01535.16|4.6,PPR|PF01535.16|39,PPR_1|PF12854.3|21,PPR_1|PF12854.3|0.00054,PPR_1|PF12854.3|7.5e-07,PPR_1|PF12854.3|3.3e-05,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|1.6e-05,PPR_1|PF12854.3|0.0079,PPR_1|PF12854.3|9e-07,PPR_1|PF12854.3|0.1,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|1.4e+03,PPR_1|PF12854.3|97,PPR_3|PF13812.2|0.25,PPR_3|PF13812.2|0.11,PPR_3|PF13812.2|3.8,PPR_3|PF13812.2|5e-05,PPR_3|PF13812.2|0.041,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.65,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|0.049,PPR_3|PF13812.2|2.1e+02,PPR_3|PF13812.2|17,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|2.4,PPR_3|PF13812.2|68,PPR_3|PF13812.2|4e+03,Clathrin|PF00637.16|2.4e+03,Clathrin|PF00637.16|2.6e+02,Clathrin|PF00637.16|33,Clathrin|PF00637.16|2.5,Clathrin|PF00637.16|1.4e+03,Clathrin|PF00637.16|0.057,ECSIT|PF06239.7|1.6,ECSIT|PF06239.7|2.6e+02,ECSIT|PF06239.7|8.4,ECSIT|PF06239.7|31,ECSIT|PF06239.7|1.6e+02,ECSIT|PF06239.7|8.7,TPR_12|PF13424.2|11,TPR_12|PF13424.2|4.1,TPR_12|PF13424.2|1.1e+03,TPR_12|PF13424.2|8e+02,TPR_12|PF13424.2|71,TPR_12|PF13424.2|96,TPR_12|PF13424.2|8.5e+03 S_Transcript_123036:94-2127(+)
MEQICFRASSRMIDTSLFLKVESSSVLAITPFQRIPNRIPHYPLSKISASYSKDIWTNPSSSSSLTSSTHQRHGRNQLQRSTTTTTYLDHSIDMEDLLKSIAQTANEQELFALLSPYKNRQLSVRFMVSLLSREPDWQRSLALLDWINEVAIYSPSVFVYNVVIRNVLRAKQWVVAHGLFDEMRQRALAPDRYTYSMLITHFGKEGMFDSALSWLQKMEHDRVSGDLVLYSNLIELSRKLCDYTKAISLFSRLKRSGIRPDLVAYNTMINVFGKAKLFREARHLVKEMRENGVEPDTVSYSTLLNMYVENHKFVEALSLFSEMNKTKCGLDLTTCNIMLDVYGQLDMAKEADRLFWSMRKMGIDPNVVSYNTLLRVYGEAELFGEAIHLFRLMQKKDIEQNVITYNTMIKIYGKSLEHEKAGNLVQEMQKRGIQPNAITYSTIISIWSRAGKLDRAAMLFQKLRSSGVEIDQVLYQTMIVAYERAGLVAHAKRLLHELRCPDNIPHDTAIAILARAGRIEEATWVFRQAFDAGEVKDISVFQCMIELYSRHRKYTNVIEVFEKMRGAGYFPTSNVIALSLNAYGKVREFERADMVYREMQEEGCIFPDEVHFQMLSLYGSRGDFKAVESLFEKLDSDPNVNKKELHLVVSNIYEGANRLNDAAKVINKMSEKGILRY*

Click here to download the sequence:
Link to NCBI Protein BLAST