Transcript Information: S_Transcript_123277.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9009286596557
Replicate 20.7273447106873
Replicate 31.5200057211759
Condition 2: 8 Hour
Replicate 11.1717247426996
Replicate 21.2292224527322
Replicate 31.0540803760705
Condition 3: 24 Hour
Replicate 10.96021465892722
Replicate 21.3697908095595
Replicate 30.970078630966


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_123277.p1 GENE.S_Transcript_123277~~S_Transcript_123277.p1 ORF type:complete len:182 (+),score=17.88,DDE_Tnp_4|PF13359.2|1.5e-24,DDE_Tnp_1|PF01609.17|4.3e-06 S_Transcript_123277:2864-3409(+)
ATGACGATGAATGTCTTTGCAGCATGTGACTTTGACTTGTTATTTTTTTATGTTTTGCCTGGATGGGAAGGCTCAACACATGATTCGCGTATGTTTACCGATACCATCGCTGATTCGTCATTCAATTTTCCTAAACCACTGCAAGGTAAATATTATTTGGCGGACAAAGGTTATTCAGATGAAGAAGGATACTTGACTCCGTATCCAAAGGTAGGGTACCATCAATCAGAATTTCGTGGAGGTGGTCCTAAGGGATATCGAGAAATTTTCAATTATGCTCATTCATCATTAAGGACTTGTATTGAAAGGGCATTTGAATTTCTCAAGACTCGATGGAAAATATGGATGGAAATGCCAATGAATTCATTAGATGACCAAACTAGAATTGTTTGTGCTGCTTGTGCTTTGCATAACTACATCAGGCTAAGCAACTTCGGTGATCCCGCCTTCAAGTTTATGGATGAAAATCTTGATTTCATACCTCCATATGTAGGCAATTCTGTGTTTAATTGTAATGCAAGAAGATACACAAGGATCAAGATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_123277.p1 GENE.S_Transcript_123277~~S_Transcript_123277.p1 ORF type:complete len:182 (+),score=17.88,DDE_Tnp_4|PF13359.2|1.5e-24,DDE_Tnp_1|PF01609.17|4.3e-06 S_Transcript_123277:2864-3409(+)
MTMNVFAACDFDLLFFYVLPGWEGSTHDSRMFTDTIADSSFNFPKPLQGKYYLADKGYSDEEGYLTPYPKVGYHQSEFRGGGPKGYREIFNYAHSSLRTCIERAFEFLKTRWKIWMEMPMNSLDDQTRIVCAACALHNYIRLSNFGDPAFKFMDENLDFIPPYVGNSVFNCNARRYTRIKI*

Click here to download the sequence:
Link to NCBI Protein BLAST