Transcript Information: S_Transcript_123279.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value8E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.9973687397985
Replicate 23.0872845455908
Replicate 32.9583911123864
Condition 2: 8 Hour
Replicate 14.2214083221628
Replicate 23.2832405853524
Replicate 35.3835246510874
Condition 3: 24 Hour
Replicate 13.5786839848072
Replicate 22.011123211553
Replicate 32.3242156960346


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_123279.p1 GENE.S_Transcript_123279~~S_Transcript_123279.p1 ORF type:complete len:293 (+),score=37.33,DDE_Tnp_4|PF13359.2|3.5e-23 S_Transcript_123279:2380-3258(+)
ATGAATCAAGGTACCTTTCGCAAATTATGCATGGATTTAGAAAGCAATTATGGATTAAGACCTTCTGATCAAATGTCTATTTTGGAGAAAGTTGGTATCTTTTTGTATGTCCTTAGTAATGGTGCCTCAAATAGCGATTGCCATGAGCGATTTCAACGCTCTGGTGAAACTATTAGCCGAATTTTCAAAGTTTTAGATGCCATGGATGATTTTTCAAGGGACATATTAAAGCCAAGAGATCCTGATTTTAAAGAAATGCCACCTTATATTCCCAATAATCCTCAATATATGCCACACTTTAAGGATTGCATTGGAGCTATAGATGGAACTCATATAAATGTAATTATTCCTGAGGAGAAACAATCAGCTTATAGAGGGCGAAAACAGGAAATGACGATGAATGTCTTTGCAGCATGTGACTTTGACTTGCTATTTATTTATGTTTTGCCTGGATTGGAAGGCTCGACACATGATTCACGTAAATATTATTTGGCGGACAAAGGTTATTCAGATGAAGAAGGATACTTGACTCCGTATCCAAAGGTAGGGTACCATCAATCAGAATTTCGTGGAGGTGGTCCTAAGGGATATCGAGAAATTTTCAATTATGCTCATTCATCATTAAGGACTTGTATTGAAAGGGCATTTGAATTTCTCAAGACTCGATGGAAAATATGGATGGAAATGCCAATGAATTCATTAGATGACCAAACTAGAATTGTTTGTGCTGCTTGTGCTTTGCATAACTACATCAGGCTAAGCAACTTCGGTGATCCCGCCTTCAAGTTTATGGATGAAAATCTTGATTTCATACCTCCATATGTAGGCAATTCTGTGTTTAATTGTAATGCAAGAAGATACACAAGGATCAAGATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_123279.p1 GENE.S_Transcript_123279~~S_Transcript_123279.p1 ORF type:complete len:293 (+),score=37.33,DDE_Tnp_4|PF13359.2|3.5e-23 S_Transcript_123279:2380-3258(+)
MNQGTFRKLCMDLESNYGLRPSDQMSILEKVGIFLYVLSNGASNSDCHERFQRSGETISRIFKVLDAMDDFSRDILKPRDPDFKEMPPYIPNNPQYMPHFKDCIGAIDGTHINVIIPEEKQSAYRGRKQEMTMNVFAACDFDLLFIYVLPGLEGSTHDSRKYYLADKGYSDEEGYLTPYPKVGYHQSEFRGGGPKGYREIFNYAHSSLRTCIERAFEFLKTRWKIWMEMPMNSLDDQTRIVCAACALHNYIRLSNFGDPAFKFMDENLDFIPPYVGNSVFNCNARRYTRIKI*

Click here to download the sequence:
Link to NCBI Protein BLAST