Transcript Information: S_Transcript_123285.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value1E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3409584419835
Replicate 22.8599912389371
Replicate 32.5614911227223
Condition 2: 8 Hour
Replicate 14.2453323316515
Replicate 24.1429349332827
Replicate 33.4539567878442
Condition 3: 24 Hour
Replicate 12.6294767164604
Replicate 22.5182012862608
Replicate 31.5179934132709


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_123285.p1 GENE.S_Transcript_123285~~S_Transcript_123285.p1 ORF type:5prime_partial len:216 (+),score=9.92 S_Transcript_123285:1-648(+)
CATCTCCAAACGAGTGTTCTCACTGGTATGGATAAAAGATATGAAATGGTATTGAGGCAGCGACTTCTACAAGATAGGCAATTGTTATTGCATTTCCTTCAATTTATGGAAGAAGAAAATGAGTTCTGGGATTTGGTCGCTTGTGCGGTCAGTTGCCTTGCACTTTATTATATTAATTATATATACAAAGAGCCATGTCATGATTCCTATCTTACGGGAGAAAAACGGATGAATGAATTATTAACAGGCCATGAAAAAAGTTCTCTTAATACTTTTCGAATGAATCAAGGTACCTTTCGCAAATTATGCATGGATTTAGAAAGCAATTATGGATTAAGACCTTCTGATCAAATGTCTATTTTGGAGAAAGTTGGTATCTTTTTGTATGTCCTTAGTAATGGTGCCTCAAATAGCGATTGCCATGAGCGATTTCAACGCTCTGGTGAAACTATTAGCCGAATTTTCAAAGTTTTAGATGCCATGGATGATTTTTCAAGGGACATATTAAAGCCAAGAGATCCTGATTTTAAAGAAATGCCACCTTATATTCCCAATAATCCTCAATATATGCCACACTTTAAGGTAACTGGATTATGCATTTTTTTTCCATTCAGTATTCTGTTATCTTTGGGAATATTTTCAATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_123285.p1 GENE.S_Transcript_123285~~S_Transcript_123285.p1 ORF type:5prime_partial len:216 (+),score=9.92 S_Transcript_123285:1-648(+)
HLQTSVLTGMDKRYEMVLRQRLLQDRQLLLHFLQFMEEENEFWDLVACAVSCLALYYINYIYKEPCHDSYLTGEKRMNELLTGHEKSSLNTFRMNQGTFRKLCMDLESNYGLRPSDQMSILEKVGIFLYVLSNGASNSDCHERFQRSGETISRIFKVLDAMDDFSRDILKPRDPDFKEMPPYIPNNPQYMPHFKVTGLCIFFPFSILLSLGIFSI*

Click here to download the sequence:
Link to NCBI Protein BLAST