Transcript Information: S_Transcript_123888.p1


Annotated TAIR IDAT5G58510.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23648287-23654421 | Reverse length=963
E-Value2E-39
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0589656592161
Replicate 21.775166975892
Replicate 31.4838983055771
Condition 2: 8 Hour
Replicate 11.7158360025279
Replicate 22.3143291696269
Replicate 33.6751461387899
Condition 3: 24 Hour
Replicate 13.2641779928474
Replicate 21.563021488024
Replicate 32.4642227292355


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_123888.p1 GENE.S_Transcript_123888~~S_Transcript_123888.p1 ORF type:internal len:174 (-),score=53.46,Rab3-GTPase_cat|PF13890.2|1.2e+03,Rab3-GTPase_cat|PF13890.2|2.4e-12 S_Transcript_123888:1-519(-)
CAGCCATTACCCAAAAATCCAGCCAATGGTGTCATTGATCTGTCTTCTTGTTTGATTCATCAGAAATTACAGATGCTTGCAATTTGTATTGAGAAGAAGCGTGAAGTGAATGCAGAGTTCTTTGATGCTGAAGGCAAAGATGAAGTGTCAGTTTATAGTGAGGAGGAAGATCAACTTCAGGAAGACTTGTTGCACAGGTCTAGTCCTGTTGGAAATCTGAACAATGAAACACAGAGCACTGAGAGGCAAGATGATCGTTTTGATACTGGAGGAAAAGGTAATGAGACTATCACCCTTGAAGAAGCATCTGATCGCATTAGAAGAGGGTCAGCAGGTGTTGCAGGATCCATGATGCTAATGAATTCGCACCAGAGAATGCATGCTCCATTTACTCAGGATGCACCACCAATGACAGAAGATATGCATGAAGAACGGCTGCATGCTGTTGTAGCATTCGGTGATTCTTTTAGATGTCAGCTTTCAAAGCAGCGAATCCAGATGCTGTATTTGAGGATTTTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_123888.p1 GENE.S_Transcript_123888~~S_Transcript_123888.p1 ORF type:internal len:174 (-),score=53.46,Rab3-GTPase_cat|PF13890.2|1.2e+03,Rab3-GTPase_cat|PF13890.2|2.4e-12 S_Transcript_123888:1-519(-)
QPLPKNPANGVIDLSSCLIHQKLQMLAICIEKKREVNAEFFDAEGKDEVSVYSEEEDQLQEDLLHRSSPVGNLNNETQSTERQDDRFDTGGKGNETITLEEASDRIRRGSAGVAGSMMLMNSHQRMHAPFTQDAPPMTEDMHEERLHAVVAFGDSFRCQLSKQRIQMLYLRIL

Click here to download the sequence:
Link to NCBI Protein BLAST