Transcript Information: S_Transcript_123979.p1


Annotated TAIR IDAT5G52220.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21207097-21207678 | Reverse length=145
E-Value3E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8550745496613
Replicate 23.8758954628067
Replicate 33.1153270411487
Condition 2: 8 Hour
Replicate 14.3227142534729
Replicate 26.0464455783045
Replicate 37.4893518612097
Condition 3: 24 Hour
Replicate 10.29520112825127
Replicate 22.1438740680329
Replicate 30.68167687581395


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_123979.p1 GENE.S_Transcript_123979~~S_Transcript_123979.p1 ORF type:5prime_partial len:148 (+),score=19.67,Ctf8|PF09696.6|2.6e-11 S_Transcript_123979:1-444(+)
CGGGCGCAAAATAGATCCTCTGCCGCCCCTCCCTCTCTCTCTCACAAAGGAAAAATAGTGGGGAAGGAAATGGCAGCAATACAAGTAAAATGTAGGTGTGGCGAAGGCAAGTGTCCAGAATGGGCAATAATAGAGGTGCAAGGAGTGGTGGAACCTCGCCCCGAGTTCGAGAACCGTCTTCAAAACCTCCAGATCGGCCGTCTTTGCCGCCCCTCTTCTCAGGAGACGTACACTTTTACCATAGGGTACCATGAATTGACAGGGTCCAAGGTGGCTCTGAAAAAGCCGCTATTAGTGCTCAAGAAAGTGAAGCATTCAGATGCTGATCAAAATGGAAGATCTCAATCTTCAACGGCAGAGTTAGATGTGATCGGAATTATTAGGCAGAAGATTCTGTTCAAGACTCGACCAAAGGCCCTCATAACCAGCAGCAGCAAGAACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_123979.p1 GENE.S_Transcript_123979~~S_Transcript_123979.p1 ORF type:5prime_partial len:148 (+),score=19.67,Ctf8|PF09696.6|2.6e-11 S_Transcript_123979:1-444(+)
RAQNRSSAAPPSLSHKGKIVGKEMAAIQVKCRCGEGKCPEWAIIEVQGVVEPRPEFENRLQNLQIGRLCRPSSQETYTFTIGYHELTGSKVALKKPLLVLKKVKHSDADQNGRSQSSTAELDVIGIIRQKILFKTRPKALITSSSKN*

Click here to download the sequence:
Link to NCBI Protein BLAST