Transcript Information: S_Transcript_124464.p1


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value2.2E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.364511444231
Replicate 218.620368491803
Replicate 318.442736083601
Condition 2: 8 Hour
Replicate 121.779122026008
Replicate 219.198536775936
Replicate 320.408790260089
Condition 3: 24 Hour
Replicate 123.858950762777
Replicate 222.503075324033
Replicate 321.82332920159


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_124464.p1 GENE.S_Transcript_124464~~S_Transcript_124464.p1 ORF type:5prime_partial len:141 (-),score=23.62,UBA_4|PF14555.2|5.3e-13 S_Transcript_124464:69-491(-)
CCCCTTCCTCACCACTCTCAACTCCGACCACCATCATTTCTCAGAATTAGGGCTTTTTCAGCTCTCGCTAAGATGAACAAGCTGGGGAGAGGACATCGAGACAAATTGCAGCAGTTTATGGCAATAACTGGTTCCAGCGAAAAAGTTGCTCTTCAGGTGTTAAAGAGTAGTGACTGGCACCTTGAGGGAGCATTTGATGTATTTTACAGTCAGCCTCAAACTAAATCATATACTGATACTAAGCATCTGGAGGAGCTGTACAACAGATACAAGGATCAATATGCTGACATGATAATGGTGGATGGTATTACTCTCCTATGCAATGACCTCCAGGTTGATCCCCAAGATATTGTAATGGATTCCTTGTCCTCTCTATACCTTTGCTTATTTTCAGAAAAATTGAAACATCATCATCAAGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_124464.p1 GENE.S_Transcript_124464~~S_Transcript_124464.p1 ORF type:5prime_partial len:141 (-),score=23.62,UBA_4|PF14555.2|5.3e-13 S_Transcript_124464:69-491(-)
PLPHHSQLRPPSFLRIRAFSALAKMNKLGRGHRDKLQQFMAITGSSEKVALQVLKSSDWHLEGAFDVFYSQPQTKSYTDTKHLEELYNRYKDQYADMIMVDGITLLCNDLQVDPQDIVMDSLSSLYLCLFSEKLKHHHQV*

Click here to download the sequence:
Link to NCBI Protein BLAST