Transcript Information: S_Transcript_124466.p1


Annotated TAIR IDAT3G12760.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Defective-in-cullin neddylation protein (InterPro:IPR014764), Protein of unknown function DUF298 (InterPro:IPR005176), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF298) (TAIR:AT1G15860.2); Has 857 Blast hits to 855 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 482; Fungi - 154; Plants - 139; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:4054963-4056826 | Forward length=250
E-Value4.3E-67
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.5386513734416
Replicate 24.1047050339562
Replicate 34.1460414451505
Condition 2: 8 Hour
Replicate 14.7940799937741
Replicate 26.9370073301478
Replicate 34.2962173467404
Condition 3: 24 Hour
Replicate 16.6042671018075
Replicate 27.027538473286
Replicate 35.6700719980494


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_124466.p1 GENE.S_Transcript_124466~~S_Transcript_124466.p1 ORF type:5prime_partial len:129 (-),score=33.02,Cullin_binding|PF03556.11|2.1e-15 S_Transcript_124466:32-418(-)
AATGACCTCCAGGTTGATCCCCAGGATATTGTAATGTTGGTTATCTCCTGGCACATGAAGGCTGCAACAATGTGTGAATTCTCAAAACAAGAATTCATTGGTGGTTTGCAAGCAATAGGGGTTGATTCTCTCGAGAAGTTTCGTGAGAGGATACCGTACATGCGCTCTGAGCTGAAAGATGAACAAAAGTTTCGTGATATATACATCTTTGCTTTTGGGTGGGCTAAGGAAAAGGGTCAGAAGTCTTTGGCATTGGATACAGCTATTGGGATGTGGCAGCTACTATTTGCTGAGAAACAGTGGCCTTTCATTGATCACTGGTGCGAGTTTTTGCAGGTAACATCAAGCAACACATCTTATTCTCTGTTGATTGGGAAAAGAAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_124466.p1 GENE.S_Transcript_124466~~S_Transcript_124466.p1 ORF type:5prime_partial len:129 (-),score=33.02,Cullin_binding|PF03556.11|2.1e-15 S_Transcript_124466:32-418(-)
NDLQVDPQDIVMLVISWHMKAATMCEFSKQEFIGGLQAIGVDSLEKFRERIPYMRSELKDEQKFRDIYIFAFGWAKEKGQKSLALDTAIGMWQLLFAEKQWPFIDHWCEFLQVTSSNTSYSLLIGKRN*

Click here to download the sequence:
Link to NCBI Protein BLAST