Transcript Information: S_Transcript_12523.p1


Annotated TAIR IDAT4G03180.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: rRNA processing (InterPro:IPR013730); Has 898 Blast hits to 687 proteins in 142 species: Archae - 2; Bacteria - 28; Metazoa - 200; Fungi - 99; Plants - 63; Viruses - 0; Other Eukaryotes - 506 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:1403289-1404663 | Forward length=185
E-Value2.5E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 138.928592232312
Replicate 230.042947482573
Replicate 328.056502765478
Condition 2: 8 Hour
Replicate 142.650780634266
Replicate 239.864730288875
Replicate 338.20979065361
Condition 3: 24 Hour
Replicate 126.841319608124
Replicate 225.195407550301
Replicate 330.588436831737


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12523.p1 GENE.S_Transcript_12523~~S_Transcript_12523.p1 ORF type:complete len:188 (+),score=61.56,rRNA_processing|PF08524.7|5.1e+02,rRNA_processing|PF08524.7|2.4e-12 S_Transcript_12523:522-1085(+)
ATGAAGAATTGGAAATCGAAAGATGGCGAAACCCAACAGGAGCAAGTTAGCAACAACAAACACAACAAGAAGAATATGAGGAAGAACTTGCAAAGATTAGGGGGTTCAGGCCTTTCTCTTCAAGCCTTTGCTAATGCTAAATCCAGAACCAATTCCTACAATCCTGCTTTGCTAAAAAAGAAAAGAGAATTCTACAAGAATGCTAAACATGTGAGCAAGTACAAGAAAATGCTTAAGCAACAAAGCCAACAGACTGATCCATCCTCTTCTGTGCAGCCTGTTGAGGAGAATGAATATGGGGATGTTCAAATGAATAAGAAAGAAAAGAAAAAGGGAAAGGGATCATACAGTTTAAATGACTTGTATGAGAAGAAGCGTGAAGAAGAAGAGAAAGCAAGGATGGAAAGGGAAGCCAAAATCAAAGCAAAAAAGGAAGAACAAGAAAGGGCTGAAGCCCGCCGAAAGGCTTTAAGGGAAAAAATGTTTAAAAGGACTCAGAAAGGCCAGCCTGTCATGAAGTACAGAATTGAGCACCTTTTGGAGACTATACAGCGCTCTTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12523.p1 GENE.S_Transcript_12523~~S_Transcript_12523.p1 ORF type:complete len:188 (+),score=61.56,rRNA_processing|PF08524.7|5.1e+02,rRNA_processing|PF08524.7|2.4e-12 S_Transcript_12523:522-1085(+)
MKNWKSKDGETQQEQVSNNKHNKKNMRKNLQRLGGSGLSLQAFANAKSRTNSYNPALLKKKREFYKNAKHVSKYKKMLKQQSQQTDPSSSVQPVEENEYGDVQMNKKEKKKGKGSYSLNDLYEKKREEEEKARMEREAKIKAKKEEQERAEARRKALREKMFKRTQKGQPVMKYRIEHLLETIQRSS*

Click here to download the sequence:
Link to NCBI Protein BLAST