Transcript Information: S_Transcript_125418.p1


Annotated TAIR IDAT4G39380.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.2).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:18309628-18311874 | Reverse length=534
E-Value3.5E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8425188949191
Replicate 23.1855364601759
Replicate 33.912095532885
Condition 2: 8 Hour
Replicate 13.7633041736117
Replicate 23.3497955182478
Replicate 34.6735280845146
Condition 3: 24 Hour
Replicate 13.3877092044237
Replicate 23.1915171382022
Replicate 33.2820129083306


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_125418.p1 GENE.S_Transcript_125418~~S_Transcript_125418.p1 ORF type:5prime_partial len:561 (+),score=110.21 S_Transcript_125418:2-1684(+)
GCCATACTCCCAAACAAAAAAGGTTTGCAAAATTCCAGAAAGTGGCTCTCTCCCGCCATATCCCAAAAATTTATCCTCTCTTTCTCTCTCCTCTTCATTCCAATCTCTTCATCGAAAATCCTGTCACTTTCTCGGAATTTCGAACTTCAAGATCGATCAAATTCAGGGACTTTAATTGACATGAAAACTATTAAGCAACGAAAGGCGAAGGGAGAACAGGTTTCCACACAAAGGAATATCAATAGGAATCTTACTGGTGGCAAGAAATCTTGCAGAAGCTCAGGACAGTGCCATAAAGCATCAGTTGGAAAAGAAAATCTCCCAACAACACGTAGACTTTCTCCTGAACGTGGTCACTGTTATTCAGGTGATCGGGCAGATCCTGCTCTATCTAGCAGTAATATAATCTCAGATATGAAGCAGGAAGATCAAATGCTTCATTCCTCTGCTAAATTCAAGCTGCAGCTTTTCCCATTAGATGACAGAATTCGTCATGGATTGGAGAAGGATGGTCACAATCCATTCTTGGAGTTGACTTTAAGAGCGCGGAAAAAGATCACATCTGTAATTGAGCATCTATGCAACAAATGGGGCAGTTCAAGCATAGCGATGGGGGAGTTGATGCTTTTTCCCTTCAATGTCGCAGTGGACAATATGACAACTTATAAACAATGGTGTTCACGTGACATTGGGATTAGTGCAGGAGATGTTCATGCTGCTATTGGGAGTCCAGAAAATTTTCGCTTGAGGTATGGTTGGGTTTCCACACAACCGAGCAGTTCATACTCATCTCCCTCTTTGTGTGGCACGGAGCCTGTTCATTTGGAAAGGGCTTCTAACAATGCCATGAACACTACAAGTGGTACCAAGATTCAGACAGAGGAGAATAGCAAAGATTTTAAGCCATGCAATACTAGTGAAGGGACAACCGAGGCAGTTGAGCTGATGGTTTCTTCTGCATCTCATGGGGAGGTCCAAATGAATCAGGCAGAGGTGAATAATGAATACATCAAGGCAAGCAAGATTAGCAAATTGGAAAATGAAACCATGATTAAAGGAAAGGCTTCAGCTGAGCCACCTAAAGATGAGGGATCAGAGATGCCGAATGATTCCTTCACATCACTCCTCTGGTCTGATTTAAGTAATATAAGTATTGGAGGTCTTCTGTCCGAGGCGTCTTTGCAGGGAACATTCAACACTCAAGATACGAAACTAGGAAGTGACAGATTGGCATCTCAGCCTACTACAGTTGTTTCTGAATCACTGGATGCTTTTATCAACCAATTAAACAGCCATCAAGCTCCACCTACTCTCTCTCCTGACATGCCATCATCTATCTTCAATGCTGAAGACACTTGCCATTCTTTTGCATTTTCCAAACCCTCGGGTTCAGCCAAAGATTTTCTTACTCTGGGTCGAAGCTCTTTTTCTGGGTTGTCTAGCCAGGTTGTTGCTCCCAGCTCATCAAAATGTCCCAAATTCGAGGTAAATAAACAAGGAAGCAATGCGGTTCAGGAACCGAAAACAGATTCACTGCCGTTCTCAGGAGTATACAACAATGAAAACAGTTTGGGCTTATCCAGCATTAGATGGAATGACTCTTTGGGACCATTTGATATTCCCTTAACACCACGACAAATTATCAAGGACGACAGTGTTGGTAATGGCAGATTTGTCAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_125418.p1 GENE.S_Transcript_125418~~S_Transcript_125418.p1 ORF type:5prime_partial len:561 (+),score=110.21 S_Transcript_125418:2-1684(+)
AILPNKKGLQNSRKWLSPAISQKFILSFSLLFIPISSSKILSLSRNFELQDRSNSGTLIDMKTIKQRKAKGEQVSTQRNINRNLTGGKKSCRSSGQCHKASVGKENLPTTRRLSPERGHCYSGDRADPALSSSNIISDMKQEDQMLHSSAKFKLQLFPLDDRIRHGLEKDGHNPFLELTLRARKKITSVIEHLCNKWGSSSIAMGELMLFPFNVAVDNMTTYKQWCSRDIGISAGDVHAAIGSPENFRLRYGWVSTQPSSSYSSPSLCGTEPVHLERASNNAMNTTSGTKIQTEENSKDFKPCNTSEGTTEAVELMVSSASHGEVQMNQAEVNNEYIKASKISKLENETMIKGKASAEPPKDEGSEMPNDSFTSLLWSDLSNISIGGLLSEASLQGTFNTQDTKLGSDRLASQPTTVVSESLDAFINQLNSHQAPPTLSPDMPSSIFNAEDTCHSFAFSKPSGSAKDFLTLGRSSFSGLSSQVVAPSSSKCPKFEVNKQGSNAVQEPKTDSLPFSGVYNNENSLGLSSIRWNDSLGPFDIPLTPRQIIKDDSVGNGRFVR*

Click here to download the sequence:
Link to NCBI Protein BLAST