Transcript Information: S_Transcript_125580.p1


Annotated TAIR IDATCG00280.1
Annotated Gene Namephotosystem II reaction center protein C
Annotated Gene Symbol(s)PSBC
Annotation TypeOrtholog
Chromosome PositionchrC:33720-35141 | Forward length=473
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1399.13887295548
Replicate 2290.30721196249
Replicate 3408.42489592733
Condition 2: 8 Hour
Replicate 1429.43217421315
Replicate 2480.38117184628
Replicate 3487.11658493071
Condition 3: 24 Hour
Replicate 1374.12819446549
Replicate 2356.21391612614
Replicate 3490.33995610368


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_125580.p1 GENE.S_Transcript_125580~~S_Transcript_125580.p1 ORF type:complete len:474 (+),score=15.08,PSII|PF00421.15|6.4e-151 S_Transcript_125580:2764-4185(+)
ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCCGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCTCGACTTATCAATTTATCTGGTAAATTACTTGGAGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCTCATTTCGTACCAGAAAAGCCGATGTACGAACAAGGATTAATTTTACTTCCCCACCTAGCAACTCTAGGTTGGGGGGTAGGCCCCGGTGGCGAAGTTATAGACACCTTTCCATACTTTGTATCTGGAGTACTTCACTTAATTTCTTCGGCAGTATTGGGCTTTGGTGGTATTTATCATGCACTTCTGGGCCCTGAGACTCTTGAAGAATCTTTTCCATTCTTCGGTTATGTGTGGAAAGATAGAAATAAAATGACCACAATTTTGGGTATTCACTTAATCTTGTTAGGTATAGGAGCTTTTCTTCTAGTATTCAAGGCTCTTTATTTTGGAGGCGTATATGATACCTGGGCTCCAGGAGGGGGCGATGTCAGAAAAATTACCAACGTCACCCTTAGCCCAAGTATTATATTTGGTTATTTACTAAAATCTCCTTTTGGAGGAGAAGGATGGATTGTTAGTGTGGACGATTTGGAAGATATAATCGGGGGACATGTATGGATAGGTTCTATTTGTATACTAGGTGGAATCTGGCATATATTAACTAAACCTTTTGCATGGGCTCGTCGCGCACTTGTCTGGTCCGGCGAGGCTTATTTGTCTTATAGTTTAGGTGCTTTATCTGTCTTTGGTTTCATTGCTTGTTGCTTTGTCTGGTTCAATAATACTGCTTATCCTAGTGAGTTTTATGGACCCACTGGACCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTTTAGTTAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTAAGTATCTAATGCGTTCTCCGACTGGAGAAGTTATTTTTGGAGGAGAAACTATGCGTTTTTGGGATTTGCGTGCTCCCTGGTTAGAACCCCTAAGGGGTCCAAATGGTTTGGACTTGAGTCGGCTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCAGCGGAATATATGACTCATGCTCCTTTAGGTTCTTTAAATTCTGTGGGTGGCGTAGCTACCGAAATCAATGCAGTCAATTATGTCTCTCCTAGAAGTTGGTTAGCTACTTCTCATTTTGTTCTAGGATTTTTCCTATTCGTAGGTCATTTGTGGCATGCGGGAAGGGCTCGTGCAGCTGCAGCAGGATTTGAAAAAGGAATTGATCGTGATTTTGAACCTGTTCTTTCGATGACTCCTCTTAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_125580.p1 GENE.S_Transcript_125580~~S_Transcript_125580.p1 ORF type:complete len:474 (+),score=15.08,PSII|PF00421.15|6.4e-151 S_Transcript_125580:2764-4185(+)
MKTLYSLRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGIGAFLLVFKALYFGGVYDTWAPGGGDVRKITNVTLSPSIIFGYLLKSPFGGEGWIVSVDDLEDIIGGHVWIGSICILGGIWHILTKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKYLMRSPTGEVIFGGETMRFWDLRAPWLEPLRGPNGLDLSRLKKDIQPWQERRSAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN*

Click here to download the sequence:
Link to NCBI Protein BLAST