Transcript Information: S_Transcript_126322.p1


Annotated TAIR IDAT4G25540.1
Annotated Gene NameHomolog of DNA mismatch repair protein MSH3
Annotated Gene Symbol(s)MSH3, ATMSH3
Annotation TypeOrtholog
Chromosome Positionchr4:13042700-13048115 | Reverse length=1081
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2069388315275
Replicate 21.6009280404546
Replicate 31.0245964490889
Condition 2: 8 Hour
Replicate 11.8617404245116
Replicate 21.5979891885519
Replicate 31.6917339369033
Condition 3: 24 Hour
Replicate 11.1145348719691
Replicate 20.92505353372846
Replicate 31.229646155805


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_126322.p1 GENE.S_Transcript_126322~~S_Transcript_126322.p1 ORF type:complete len:882 (+),score=208.72,MutS_V|PF00488.17|2.2e-80,MutS_III|PF05192.14|4.4e-29,MutS_III|PF05192.14|1.3e+03,MutS_II|PF05188.13|2.8e-08,MutS_II|PF05188.13|2.8e+03,MutS_IV|PF05190.14|4.9e-08 S_Transcript_126322:701-3346(+)
ATGTTCATGTTAGGAGGCTTGTTTAGCCAAGGCTACAAAGTGGGTGTTGTTAAGCAGACTGAAACTGCCATGATTAAGGCCCACGGGTCAAACCGGGCAGGCCCGTTCACTCGTGGGCTGTCTGCATTGTACACTAAGGCCACCATCGAGGCGGCCGAGGATTTAGGGGGTAGTGAAGAGGGTTGTGGGTCTGTTAATAATTACTTGTTTTGTGTTGTGGAGAGGGAGTTTTTGGTTGAGAATTTGGATTGTGGGATCGAGAGTGGGTTTGAGGTCAAAATTGGGGTTGTTGCTGTTGAAACATCTACTGGGGATATAGTTTATGGAGAGTTTAATGATAATTATTTGAGGTCTGGCCTTGAGGCGGTCATTTTGAGTTTGTCCCCTGCTGAGTTGCTTCTTGGGGAGCCTTTATCAAATAGGACTGAAAAGTTGCTATTGACATATGCTGGTCCTGCATCCAATGCCCGTGTGGAGCGCGCTTCTTGTGATTGTTTTAGAGATGGAGGTGCCTTACCTGAACTGATGAATTTGTTTGAGAACACAAGTGAAGCTGATGTACAACGTGATCAAGATCGCAATGAAGAAGTAGCCAGTGATGAAAACCGTGAGCTGGCCATTAAGGGGATCATGGCAATGCCGCAGTTAGCTGTGCAAGCATTGGCTATTACCATCCGACATCTCAAGCAATTTGGCCTTGAGAAAATATTTTCTCTTGGAGCGTCATTTCGGCCATTTTCAAGCAACATTGAGATGAACCTCTCTGCCAATACACTTCAACAATTGGAGGTTTTGAAGAACAATAATGATGGATCTGAGTCTGGTTCCTTGCTTCATACAATGAATCATACTCTTACCATATTTGGTCAAAGGCTTCTGCGGCATTGGGTAACTCATCCATTATGTGATAGAAACATGATAGCAGCTCGTCTTGATGCTGTTGCTGGGATTGCAGAATCTATGGGTGGTTTTAGTGCTTCAGATAGCTTCCAGAAGCTTGATGAGGGGAACCTGGATGGTGCTGCTGCTCCAAATGATATAAGTTACGTGCTCTCTACGGTTTTAACTGCATTGGGGCAGTCTGCTGATGTTCAACGAGGAATAATTAGAATTTTTCATAAGACAGCAACCCCATCTGAGTTCATTACTGTTGTTCAAGCTATGTTACTAGCTGCGAAGCAACTTCAGCAACTTGAAACTGGAGCTGTTCGTTCCACCTTACTTAGAAACTTGATTCAGACAGCTTCTTCATCTAGTGTGATCAGCTGTTCTGCTAAACTCTTATCAACGTTAAATAAAGAGGCTGCTCACAAGGGGGATCTATTGAATCTGATTGCCATTGATGATGGCCAGTTCTTTGAGGTTGCAAAAGCTCGAACAAAGGTTCAATTGGCAAATGAGAAGTTGGAATCATTGATTACTTTGTATCGCAAGCAGCTTGGTATCCAAAACTTGGATTTCATGACCGTGGCTGGGACAACTCATTTGATAGAGCTGACTTCAGATGCTAGGGTACCTTCAAACTGGGTGAAGGTAAACAGCACAAAGAAAACAGTTCGCTATCATACACCTGAAGTTTTGACTGCTTTAGACCAGTTATCATTGGCAAATGAAGAACTCAGCATTGTTTGTCGTGCTGCATGGGATAAATTCTTGGGGGAATTCGCCAGAAACTATGCAGAATTTCAAGCTGCTGTCCAAGCACTTGCTGCTTTAGATTGTTTGCATTCACTTGCAATTCTATCAAGAACTAAGAACTATGTCCGTCCCGTTTTTGTGAATGATAAAGAGCCTGTTCAGATACAGATTACCTCTGGTCGTCATCCAGTTTTGGAGACTGTATTGCAAGATAACTTTGTCCCAAATGATGCTTATCTACACCGAGATCAGGAATACTGTCAGATTGTGACTGGACCAAACATGGGTGGGAAAAGTTGCTATATTCGCCAAGTTGCCCTCATTGTAATCATGGCTCAGGTTGGGTCATTTGTACCAGCATCATCTGCTAGACTCCAGGTCCTAGATGCTGTTTACACCCGAATGGGTGCATCAGACAACATCCAGCAAGGAAGGAGCACGTTTTTGGAAGAACTTAGTGAGGCTTCTAACATACTCCAGCAATGCACAGCACGCTCCCTGGTTATTATGGATGAGTTAGGGAGGGGCACTAGTACTCATGATGGTGTAGCAATTGCCTATGCTACATTGCATTATCTTCTACATCAGAAGAAATGCATGGTGCTCTTTGTCACTCATTACCCTAAAATTGCTGATATCCAGGAAGAATTTCCTGGTTCAGTTGGAACATACCATGTTTCATATCTGACATCAAAGAAGGAAGACAATATTTGCTCAAAACCTGGTAAAAATCATGACAAGATGGACCATGAGGATGTTACTTATCTCTATAAGCTTGTACCTGGTATCTCCCATAGGAGTTTTGGTTTCAAGGTTGCTCAGCTTGCACAGGTTAGCCATTGTTTGTCTTCACTGAATTGCTGCCACTCGACCCTTAAACCACCCAGCCACCACCTCCCCTCAATAGGAAAGGAGAACATATATAGAAAAGGCCATTGTTTTCCCACTACTGGTGGCTGGCACAACGGTAATAAAGCGGGCACTATAACGTATGTATTAGAAATCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_126322.p1 GENE.S_Transcript_126322~~S_Transcript_126322.p1 ORF type:complete len:882 (+),score=208.72,MutS_V|PF00488.17|2.2e-80,MutS_III|PF05192.14|4.4e-29,MutS_III|PF05192.14|1.3e+03,MutS_II|PF05188.13|2.8e-08,MutS_II|PF05188.13|2.8e+03,MutS_IV|PF05190.14|4.9e-08 S_Transcript_126322:701-3346(+)
MFMLGGLFSQGYKVGVVKQTETAMIKAHGSNRAGPFTRGLSALYTKATIEAAEDLGGSEEGCGSVNNYLFCVVEREFLVENLDCGIESGFEVKIGVVAVETSTGDIVYGEFNDNYLRSGLEAVILSLSPAELLLGEPLSNRTEKLLLTYAGPASNARVERASCDCFRDGGALPELMNLFENTSEADVQRDQDRNEEVASDENRELAIKGIMAMPQLAVQALAITIRHLKQFGLEKIFSLGASFRPFSSNIEMNLSANTLQQLEVLKNNNDGSESGSLLHTMNHTLTIFGQRLLRHWVTHPLCDRNMIAARLDAVAGIAESMGGFSASDSFQKLDEGNLDGAAAPNDISYVLSTVLTALGQSADVQRGIIRIFHKTATPSEFITVVQAMLLAAKQLQQLETGAVRSTLLRNLIQTASSSSVISCSAKLLSTLNKEAAHKGDLLNLIAIDDGQFFEVAKARTKVQLANEKLESLITLYRKQLGIQNLDFMTVAGTTHLIELTSDARVPSNWVKVNSTKKTVRYHTPEVLTALDQLSLANEELSIVCRAAWDKFLGEFARNYAEFQAAVQALAALDCLHSLAILSRTKNYVRPVFVNDKEPVQIQITSGRHPVLETVLQDNFVPNDAYLHRDQEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSARLQVLDAVYTRMGASDNIQQGRSTFLEELSEASNILQQCTARSLVIMDELGRGTSTHDGVAIAYATLHYLLHQKKCMVLFVTHYPKIADIQEEFPGSVGTYHVSYLTSKKEDNICSKPGKNHDKMDHEDVTYLYKLVPGISHRSFGFKVAQLAQVSHCLSSLNCCHSTLKPPSHHLPSIGKENIYRKGHCFPTTGGWHNGNKAGTITYVLEI*

Click here to download the sequence:
Link to NCBI Protein BLAST