Transcript Information: S_Transcript_126325.p1


Annotated TAIR IDAT4G25540.1
Annotated Gene NameHomolog of DNA mismatch repair protein MSH3
Annotated Gene Symbol(s)MSH3, ATMSH3
Annotation TypeOrtholog
Chromosome Positionchr4:13042700-13048115 | Reverse length=1081
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.507021855488
Replicate 22.8178019271826
Replicate 32.9568517090555
Condition 2: 8 Hour
Replicate 14.2689413587739
Replicate 24.4986869547276
Replicate 35.2517305693432
Condition 3: 24 Hour
Replicate 12.8889066935025
Replicate 22.7919188173761
Replicate 32.8557568393474


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_126325.p1 GENE.S_Transcript_126325~~S_Transcript_126325.p1 ORF type:complete len:1104 (+),score=265.87,MutS_V|PF00488.17|1.8e-84,MutS_III|PF05192.14|2.9e-29,MutS_I|PF01624.16|1.1e-26,MutS_II|PF05188.13|3.9e-08,MutS_II|PF05188.13|3.8e+03,MutS_IV|PF05190.14|6.5e-08 S_Transcript_126325:178-3489(+)
ATGGGGAAACAAAAACAACAAGTAATTTCCCGTTTCTTTGCACCAAAACCCAAAACCCCTTCATCTCCTTCTCCATCCCAACCTTCACCCTCTAAAATCACTACCACCGTCTCTTTTTCCCCTGCCAAACGCCTTCAAACCTCTCAATTCATCTCCCCACCTTCTAAAAAACCCAAACTTTCCCCTCATACTCAAAACCCGATTCCCCAATTTCCCCATTTCCCCACTTCCAACCCTACCCTTCACCAAAAATTCCTCCAGAAACTTCTAGAACCCACTGATGATGCCTTAGAACCTACCCCAACACAACCCCATTTGGATAAACAACCCACTAAGTATACCCCACTTGAGCAACAAGTGGTTGAACTTAAGAACAAATACCCTGACGTCCTTTTGATGATTGAAGTTGGTTATAAGTTCAGATTCTTTGGTAAAGATGCTGAAATAGCTGCTAGGGTTTTAGGTATTTATGCTCATATTGATCATAACTTTTTAACTGCTAGTATTCCCACATTTAGGCTTAATGTTCATGTTAGGAGGCTTGTTAGCCAAGGCTACAAAGTGGGTGTTGTTAAGCAGACTGAAACTGCCATGATTAAGGCCCACGGGTCAAACCGGGCAGGCCCGTTCACTCGTGGGCTGTCTGCATTGTACACTAAGGCCACCATCGAGGCGGCCGAGGATTTAGGGGGTAGTGAAGAGGGTTGTGGGTCTGTTAATAATTACTTGTTTTGTGTTGTGGAGAGGGAGTTTTTGGTTGAGAATTTGGATTGTGGGATCGAGAGTGGGTTTGAGGTCAAAATTGGGGTTGTTGCTGTTGAAACATCTACTGGGGATATAGTTTATGGAGAGTTTAATGATAATTATTTGAGGTCTGGCCTTGAGGCGGTCATTTTGAGTTTGTCCCCTGCTGAGTTGCTTCTTGGGGAGCCTTTATCAAATAGGACTGAAAAGTTGCTATTGACATATGCTGGTCCTGCATCCAATGCCCGTGTGGAGCGCGCTTCTTGTGATTGTTTTAGAGATGGAGGTGCCTTACCTGAACTGATGAATTTGTTTGAGAACACAAGTGAAGCTGATGTACAACGTGATCAAGATCGCAATGAAGAAGTAGCCAGTGATGAAAACCGTGAGCTGGCCATTAAGGGGATCATGGCAATGCCGCAGTTAGCTGTGCAAGCATTGGCTATTACCATCCGACATCTCAAGCAATTTGGCCTTGAGAAAATATTTTCTCTTGGAGCGTCATTTCGGCCATTTTCAAGCAACATTGAGATGAACCTCTCTGCCAATACACTTCAACAATTGGAGGTTTTGAAGAACAATAATGATGGATCTGAGTCTGGTTCCTTGCTTCATACAATGAATCATACTCTTACCATATTTGGTCAAAGGCTTCTGCGGCATTGGGTAACTCATCCATTATGTGATAGAAACATGATAGCAGCTCGTCTTGATGCTGTTGCTGGGATTGCAGAATCTATGGGTGGTTTTAGTGCTTCAGATAGCTTCCAGAAGCTTGATGAGGGGAACCTGGATGGTGCTGCTGCTCCAAATGATATAAGTTACGTGCTCTCTACGGTTTTAACTGCATTGGGGCAGTCTGCTGATGTTCAACGAGGAATAATTAGAATTTTTCATAAGACAGCAACCCCATCTGAGTTCACTACTGTTGTTCAAGCTATGTTACGAGCTGCAAAGCAACTTCAGCAACTTGAAACTGGAGCTGTTCGTTCCACCTTACTTAGAAACTTGATTCAGACAGCTTCTTCATCTAGTGTGATCAGCTGTTCTGCTAAACTCTTATCAACGTTAAATAAAGAGGCTGCTCACAAGGGGGATCTATTGAATCTGATTGCCATTGATGATGGCCAGTTCTTTGAGGTTGCAAAAGCTCGAACAAAGGTTCAATTGGCAAATGAGAAGTTGGAATCATTGATTACTTTGTATCGCAAGCAGCTTGGTATCCAAAACTTGGATTTCATGACCGTGGCTGGGACAACTCATTTGATAGAGCTGACTTCAGATGCTAGGGTACCTTCAAACTGGGTGAAGGTAAACAGCACAAAGAAAACAGTTCGCTATCATACACCTGAAGTTTTGACTGCTTTAGACCAGTTATCATTGGCAAATGAAGAACTCAGCATTGTTTGTCGTGCTGCATGGGATAAATTCTTGGGGGAATTCGCCAGAAACTATGCAGAATTTCAAGCTGCTGTCCAAGCACTTGCTGCTTTAGATTGTTTGCATTCACTTGCAATTCTATCAAGAACTAAGAACTATGTCCGTCCCGTTTTTGTGAATGATAAAGAGCCTGTTCAGATACAGATTACCTCTGGTCGTCATCCAGTTTTGGAGACTGTATTGCAAGATAACTTTGTCCCAAATGATGCTTATCTACACCGAGATCAGGAATACTGTCAGATTGTGACTGGACCAAACATGGGTGGGAAAAGTTGCTATATTCGCCAAGTTGCCCTCATTGTAATCATGGCTCAGGTTGGGTCATTTGTACCAGCATCATCTGCTAGACTCCAGGTCCTAGATGCTGTTTACACCCGAATGGGTGCATCAGACAACATCCAGCAAGGAAGGAGCACGTTTTTGGAAGAACTTAGTGAGGCTTCTAACATACTCCAGCAATGCACAGCACGCTCCCTGGTTATTATGGATGAGTTAGGGAGGGGCACTAGTACTCATGATGGTGTAGCAATTGCCTATGCTACATTGCATTATCTTCTACATCAGAAGAAATGCATGGTGCTCTTTGTCACTCATTACCCTAAAATTGCTGATATCCAGGAAGAATTTCCTGGTTCAGTTGGAACATACCATGTTTCATATCTGACATCAAAGAAGGAAGACAATATTTGCTCAAAACCTGGTAAAAATCATGACAAGATGGACCATGAGGATGTTACTTATCTCTATAAGCTTGTACCTGGTATCTCCCATAGGAGTTTTGGTTTCAAGGTTGCTCAGCTTGCACAGCTGCCACCATCTTGTATTGAACGGGCAATGGTAATGGCTACAAGGTTGGAGTCATTGGTACAGAAGAGGATGGAAAAATATCAACAAAAATCAGTATCTCCAGATATACTGTTGATGGATTTTGATCATGACGCATTAGATAATATAGCAGAAATTCTTGATTCATCGCGTACAGATGAAGAGGAAGGCATGAGTCAATTCATGGTTGCTTTTAGGAAATTCTTCCAGAATTTGTGGTCCATCTTGGGGAATGATGACCTTTTGCAGAGTCATGAACTGTTGAAGTGTGCTATGGGTCTTGCAGCTGAACTAATTACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_126325.p1 GENE.S_Transcript_126325~~S_Transcript_126325.p1 ORF type:complete len:1104 (+),score=265.87,MutS_V|PF00488.17|1.8e-84,MutS_III|PF05192.14|2.9e-29,MutS_I|PF01624.16|1.1e-26,MutS_II|PF05188.13|3.9e-08,MutS_II|PF05188.13|3.8e+03,MutS_IV|PF05190.14|6.5e-08 S_Transcript_126325:178-3489(+)
MGKQKQQVISRFFAPKPKTPSSPSPSQPSPSKITTTVSFSPAKRLQTSQFISPPSKKPKLSPHTQNPIPQFPHFPTSNPTLHQKFLQKLLEPTDDALEPTPTQPHLDKQPTKYTPLEQQVVELKNKYPDVLLMIEVGYKFRFFGKDAEIAARVLGIYAHIDHNFLTASIPTFRLNVHVRRLVSQGYKVGVVKQTETAMIKAHGSNRAGPFTRGLSALYTKATIEAAEDLGGSEEGCGSVNNYLFCVVEREFLVENLDCGIESGFEVKIGVVAVETSTGDIVYGEFNDNYLRSGLEAVILSLSPAELLLGEPLSNRTEKLLLTYAGPASNARVERASCDCFRDGGALPELMNLFENTSEADVQRDQDRNEEVASDENRELAIKGIMAMPQLAVQALAITIRHLKQFGLEKIFSLGASFRPFSSNIEMNLSANTLQQLEVLKNNNDGSESGSLLHTMNHTLTIFGQRLLRHWVTHPLCDRNMIAARLDAVAGIAESMGGFSASDSFQKLDEGNLDGAAAPNDISYVLSTVLTALGQSADVQRGIIRIFHKTATPSEFTTVVQAMLRAAKQLQQLETGAVRSTLLRNLIQTASSSSVISCSAKLLSTLNKEAAHKGDLLNLIAIDDGQFFEVAKARTKVQLANEKLESLITLYRKQLGIQNLDFMTVAGTTHLIELTSDARVPSNWVKVNSTKKTVRYHTPEVLTALDQLSLANEELSIVCRAAWDKFLGEFARNYAEFQAAVQALAALDCLHSLAILSRTKNYVRPVFVNDKEPVQIQITSGRHPVLETVLQDNFVPNDAYLHRDQEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSARLQVLDAVYTRMGASDNIQQGRSTFLEELSEASNILQQCTARSLVIMDELGRGTSTHDGVAIAYATLHYLLHQKKCMVLFVTHYPKIADIQEEFPGSVGTYHVSYLTSKKEDNICSKPGKNHDKMDHEDVTYLYKLVPGISHRSFGFKVAQLAQLPPSCIERAMVMATRLESLVQKRMEKYQQKSVSPDILLMDFDHDALDNIAEILDSSRTDEEEGMSQFMVAFRKFFQNLWSILGNDDLLQSHELLKCAMGLAAELIT*

Click here to download the sequence:
Link to NCBI Protein BLAST