Transcript Information: S_Transcript_126470.p1


Annotated TAIR IDAT5G27680.1
Annotated Gene NameRECQ helicase SIM
Annotated Gene Symbol(s)RECQSIM
Annotation TypeOrtholog
Chromosome Positionchr5:9794244-9798637 | Reverse length=858
E-Value4.1E-302
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5499241271594
Replicate 22.6485066759572
Replicate 32.8232822859256
Condition 2: 8 Hour
Replicate 13.0062224235606
Replicate 22.2174739841139
Replicate 32.6527431490781
Condition 3: 24 Hour
Replicate 12.9110472492972
Replicate 22.6457753602344
Replicate 32.6666478666202


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_126470.p1 GENE.S_Transcript_126470~~S_Transcript_126470.p1 ORF type:complete len:908 (+),score=182.70,DEAD|PF00270.25|1.4e-16,DEAD|PF00270.25|4e+03,Helicase_C|PF00271.27|7.9e+03,Helicase_C|PF00271.27|1.2e-15,RecQ_Zn_bind|PF16124.1|1.6e+04,RecQ_Zn_bind|PF16124.1|1.3e-09,RecQ_Zn_bind|PF16124.1|1.6e+04 S_Transcript_126470:256-2979(+)
ATGGATGGGAATCCAGAGTCTACTGACCAAGTTGTTGCAAAGCTTCTTGACATGGGCTTTGAAAGTTCTCAAGTCATGGAAGCTATAGAGGCAGTGGGTCCATTATTAAATGATGCAGTGGATCACATACTGAATCAATCTTCAAGGAAAAGCAACGATGCATCAACTAGTTGTAATTGTTTTGCTGCCGTTAACATGCCTAAAAAGGCCAAATCTTTGGGCAAGAGTTCCTTCTCCACACCTCGTCCGCTTGGTCAGATGAGACAGTCTAGCATAATGGATCATCTTCAGCCTGTAAGCAGGATAAAGAAGAGCCAGTCCAGTAGCAGTTATGAGGTAGTAACTTCCAACACAGATAAGCTAAACGTGCATTTAGGAGTGCAGATAGAAGTAGACAATCCTTGTACTGAAGAGATATTTCATCCTAACGAAACTTTTGAGTCAACTCCTCTATCATGCGTCGTAAATCCTCTTCAAAGAGAAGAGCATGATGTGGAAATCGGACCAGATTGGGAGCAGAAGGCAAACAGGCTATTGCGAAAACATTTTGGGTATTCAAAATTGAAAAAATTTCAAAAAGAGGCTCTTAGTGCTTGGTTAGCCCATCAAGATTGTCTTGTTCTCGCAGCAACTGGGTCTGGAAAATCTATATGTTTTCAGCTCCCTGCACTTTTGACCGGGAAGGTCGTGGTTGTCATTTCTCCATTGATAAGCTTGATGCATGACCAGTGCTTAAAGCTAGCAAAACATGGAGTCTCTGCATGCTTTCTTGGATCTGGACAACCTGACAGTAGTGTTGAAACGAAAGCAATGAAGGGGATGTATTCCATCATATATGTTTGTCCTGAGACAGTGTTAAGACTAATAAAGCCTCTTCAGAGGCTTGCTGAGAATCATGGAATTGCTTTATTTGCCATTGATGAAGTACATTGTGTTTCAAAGTGGGGTCATGACTTTAGACCAGACTACAGGCGATTGTCTGTGTTGCGAGAGAATTTCAGTGTCAACAGTTTGCAGTCCTTGAAAATAGATATACCAATAATGGCATTGACCGCCACTGCCACCAACTGTGTCAGAGAAGACATCCTCAAGGCACTTCACATGTCAACTGAAGCCAAAGTTGTTCTCACAACATTCTTTCGGCCAAATCTTCATTTTTCAGTGAAGCATAGTAGAACATCTTCTCCGTCTTCCTACAGTAAAGATCTCCATGAACTGGTTCAAGTATACTCTAGCAAGAAAAAAACCAGCGAAAGGTCCTTTGTCCGGACAGAGGATCTTCAGAATGCATCAGGCCACTCAACCAGTTCAAGTACTGATGGTAGTGATAGTGATAGTGATAGCGATAGCATGGAGGAGAATGATTTTGGTGGAGAGGATGATGAGGTCAACTCATGTAAGAAAAATGGCTTCAGTGCTCCAAAAGAGAGACAGTTATCAGTTGAATATCTGGAAGATGATTTTGATGACATTCAGACAGCAGATGACTTTGATGTTTCATGTGGTGAGTTTCTTGGACAAGTACTGGCCAATGAGCAGAAGGTTAATGGGTACTGTGAATTGCCAGATTTCCCTTCAAAGTCAGCAGGACCACAAATTATGCATGGTCCTTTGGAACAAGGGTCAACCATCATATATGTTCCTACCAGAAAAGAGACGCTAAGTATAGCAAAATTTCTCTGTGCAAAGGGCGTGAAGGCTGCAGCCTATAATGCAGCGTTGCCAAAATCACACTTACGACGAGTACACCAGGAGTTTCACGAGAATACTTTAGACGTCGTCGTTGCAACTATTGCTTTCGGAATGGGCATCGACAAATTAAATGTGCGGAGGATAATCCATTATGGATGGCCTCAGAGTCTGGAAGCATATTATCAAGAAGCAGGTCGTGCTGGTCGTGATGGGAAGCCATCAGAGTGCATTTTGTATGCAAATTTATCCAGAATACCCACTCTCTTGCCTAACAAAAGAAGTGAGGAACAAAGAAAACAGGCGTACAAGATGTTATCTGATTGCTATAAATATGGTATGAATACTTCTCTTTGCCGAGCCAAAGTACTGGTTGAGTACTTTGGCGAAGAGTTCAGCAATCAGAGGTGCATGTCATGTGATGTTTGCAGAGACGGTCCTCCTGAACTGCAAAATTTGAAGGCTGAAGCAAGTATTTTCATGCAAGCTATTGCTGCTCAATACAAGCAGCAGATGTTTGCAGAAAATTCATATGATGACATTATAGGAAATGATCTGAGGAGGCGACCTGGAGGCTGTGAGAAGCTAAATCTCAGGATGGTTATTACAAAGATAAGGGAACAGTCCCAGAAATTTCTAGCCACCGATCAGTGGTGGTGGCGGGGCCTAGCCCGTATCCTGGAGGACAAGGGTTTCATCAGGGAGGGAAGTGACATGATTTCTGTTCAAATAAAGTATCCCGAGCCAACTGTGAAGGGTCTGAAAATTTTGGAATCAGCTGAGGAGCAGGATTTTAATGTTTATCCTGAGGCCGACATGTTATTATCATTGACCAGAGAACAAAAGCCTTTTTCTTCTTTCTCAGAATGGGGAAAGGGCTGGGCAGATCCTGAGATTCGAAGACAGCGGCTAAAAAGGAGGAGATCAAGCAAGAAATCACGAAATCATAGTAAGAGAAAGTCGAGGAAGCTACAGCGAGAGCCAAAAACAGTCCGAGGCAGATTAGCAGCCAAACTCTCCAAGCAGATGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_126470.p1 GENE.S_Transcript_126470~~S_Transcript_126470.p1 ORF type:complete len:908 (+),score=182.70,DEAD|PF00270.25|1.4e-16,DEAD|PF00270.25|4e+03,Helicase_C|PF00271.27|7.9e+03,Helicase_C|PF00271.27|1.2e-15,RecQ_Zn_bind|PF16124.1|1.6e+04,RecQ_Zn_bind|PF16124.1|1.3e-09,RecQ_Zn_bind|PF16124.1|1.6e+04 S_Transcript_126470:256-2979(+)
MDGNPESTDQVVAKLLDMGFESSQVMEAIEAVGPLLNDAVDHILNQSSRKSNDASTSCNCFAAVNMPKKAKSLGKSSFSTPRPLGQMRQSSIMDHLQPVSRIKKSQSSSSYEVVTSNTDKLNVHLGVQIEVDNPCTEEIFHPNETFESTPLSCVVNPLQREEHDVEIGPDWEQKANRLLRKHFGYSKLKKFQKEALSAWLAHQDCLVLAATGSGKSICFQLPALLTGKVVVVISPLISLMHDQCLKLAKHGVSACFLGSGQPDSSVETKAMKGMYSIIYVCPETVLRLIKPLQRLAENHGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSVNSLQSLKIDIPIMALTATATNCVREDILKALHMSTEAKVVLTTFFRPNLHFSVKHSRTSSPSSYSKDLHELVQVYSSKKKTSERSFVRTEDLQNASGHSTSSSTDGSDSDSDSDSMEENDFGGEDDEVNSCKKNGFSAPKERQLSVEYLEDDFDDIQTADDFDVSCGEFLGQVLANEQKVNGYCELPDFPSKSAGPQIMHGPLEQGSTIIYVPTRKETLSIAKFLCAKGVKAAAYNAALPKSHLRRVHQEFHENTLDVVVATIAFGMGIDKLNVRRIIHYGWPQSLEAYYQEAGRAGRDGKPSECILYANLSRIPTLLPNKRSEEQRKQAYKMLSDCYKYGMNTSLCRAKVLVEYFGEEFSNQRCMSCDVCRDGPPELQNLKAEASIFMQAIAAQYKQQMFAENSYDDIIGNDLRRRPGGCEKLNLRMVITKIREQSQKFLATDQWWWRGLARILEDKGFIREGSDMISVQIKYPEPTVKGLKILESAEEQDFNVYPEADMLLSLTREQKPFSSFSEWGKGWADPEIRRQRLKRRRSSKKSRNHSKRKSRKLQREPKTVRGRLAAKLSKQMR*

Click here to download the sequence:
Link to NCBI Protein BLAST