Transcript Information: S_Transcript_12649.p1


Annotated TAIR IDAT3G49601.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:18387504-18389279 | Reverse length=591
E-Value4.5E-85
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.277061137901
Replicate 217.998591481131
Replicate 317.864956131107
Condition 2: 8 Hour
Replicate 132.148426756279
Replicate 230.642143562934
Replicate 329.489593679072
Condition 3: 24 Hour
Replicate 117.601829679764
Replicate 217.04045983184
Replicate 316.11935168748


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12649.p1 GENE.S_Transcript_12649~~S_Transcript_12649.p1 ORF type:complete len:798 (+),score=293.34 S_Transcript_12649:165-2558(+)
ATGTACAACGGAATAGGGTTACAGACACCGAGGGGGTCAGGGACCAATGGATATGTGCAGACGAACAGGTTCCTTGTTAGGGCAAAGACGTCGAAGGTCATAGTTGATGGGAACAAGGGGTATGGTCCTGATCAGGGTACTGCTGGTATCAGTAAAAAGCCCAACAAGGATATACTGGAGCATGATCGGAAACGGCAGATTGAGCTCAAGCTGGTCATCCTTGAGGACAAACTCGTCGATCAGGGTTACACTGATGCTGAGATTGCTGAGAAGCTCAACGAGGCTCGTAGGAATCTTGAAGCTGTTGCTGCTGCTTCTGGTGAGGATGGTGCTGGTGCTGTTGTCTCGGATAATAAGGTATCAGATACACAAACCCACCAAATTGCAGCTAGGAAGGAGAAACAGATGGAGAAATTAAGAGCTGCTCTTGGGATTACTTCTCCCGATGTTGATACAGAAAAGCAGGACAACCTGGGTGAGTCAGGTATCGATATTGATGATGATGAGAAGCAGAGGAGGAATAGGGAAGGTTCAGATGACAGCAGTGAATGTGAAGAAGGTGAAATTTTGCATGGTGATGAGGACATAAAGAGCGAGAAGTATTCTCAAGATGATGATAAGAGCAAAAAACAAGGGGGAATGAGGAGAGAGCAAAATAGAAGGAGAAAACATGGCTATGAGTCGCTTGATTCAGAAAGTGACAAGGAGCAGACAAGTGAATCAGAAACTGATTCAGAGCAAGAAAGAAAGAGAAAGCACAAGTCTACTAAGATGCCCGAGCAAATTGTTTCTGATGACAGTGATGATTCAGGTTCTGATAGTGATGAACCTAATAGAGGTCTTCGCAAGGATGCTGGGAGACATAAGAGAGGTCACAAGAGGCATGATACAAGTAGTGAATCTGACCAAAGCAGCAGGTCTCCAGACTATAGAACCATGAAATCAAAACATAAGTTGGGCAAAGGCAGATATGATTCTGAGGACGAGCATGATGTTGGTGCTTCCAAGAGAAAAACTACGGCTAATAAAGACCGAGAGTTTGCTGGAAGCCACAAGGACAAGAAATCTGCTTTGGATAGGGGTGATTATGGTAGAAGGCATGAGGATAGGTACAATAAAAGTTCTGATAGGTTACGTCATGATAGTGGATCTGATTCTGATATGAGGGCAAAGCCTGAAAAGCGAGCACCAGAGAGAAGTCGAAAAAGTAGGAGGCATGATACAGATGAAGATGATTCTGATTCAGGTGAAGATATCAAGGAACAAAGACGTAGGAGAGTCAAACGTGACTCGGAAGACAACTCCGACATTGAAACAATTAGAAAGGCTACTAATGATCAAAAAGGTAAAGTGGAGCTAAAAATGAGAGGAGGTAATAAGGATGCTGGTAATTATGTCAAAAAAAACTCGCACCAATATGAGGATGATAAGAGGCGGCATAATAGAATTGAAGATGTTGGATTTAGAAAACGTGATAGGAGGGAGGAAGATGAGTATGTTACAAAGAGGTCAGAAAACAGAGATGGAAACTTGCAACGAGGCAGAAAGAAAGAGAGGGAGGAGCAAAATGACCAACAAAGGAGAAGGCGAGATGAGGAAGATTACCATGGGAGGAGAAAGCTGGAGAAGGAGGAAGATGATAATGAGAGGAGGGGGGTTGTTAGGAAGGAGGATGATGACCATGACAGGAGAAGGCGGGAAAGGAAGGAGGAAGGTGTTCATGAGAGGAGAAAGCGGGATGGAAAAGAGGAAGGCGATTATGAAAGGAGAAAGCGCGAGATGGAGGAAGAAGAACATCAAAGGAGAAAGCTTGAAAAGGAGGAGGACAATGAGCGAAGCAGAAAGGTGGAAGGAAGGGAAGAAGATGCACATAAAAGCAGAAAACGTGAAAGGCTGCAGGAAAGTGAGCATGGAAATAGAAGACATGATGATAGGGATGGTGATGAACAGAAAGACAGAAAGCAGGAGAGGAGGGAGGAAGACAGGAAGCGGAGTAGGAGAGATGAGGATGAGCAGGGAGCCCAAAATAGGGAGAGGAGAGATGAAGATGAGAAGAGAGGCAGAAAATACGAGAGAAGGGAGGAGGATGAGCTGCGAAGCAGGAAGCGGGATCGGGGGGAAGAAGGTGACCATGTTGTCAGAAAGCGGGAGAGAAGGGAGGAGGAAGAGCATGTAAACCATAATCCGGAGAGGAGGGGACAAGAGCAGAGTGGTAGAGATGAGGAAAGGGAGCAAGATGATCTTGAACACAAAATTCGGGAGAAAAGGGAGGAGGAGGATCGTAGAGGCAGAAGGCATCAGAAGGACAGAGATTCTTCCAGGAGGCTCAGGTCTGATGATGTGCGAGGAAGGTATGAGACAGACAGACGTGATGATGAACGAAGGAGACGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12649.p1 GENE.S_Transcript_12649~~S_Transcript_12649.p1 ORF type:complete len:798 (+),score=293.34 S_Transcript_12649:165-2558(+)
MYNGIGLQTPRGSGTNGYVQTNRFLVRAKTSKVIVDGNKGYGPDQGTAGISKKPNKDILEHDRKRQIELKLVILEDKLVDQGYTDAEIAEKLNEARRNLEAVAAASGEDGAGAVVSDNKVSDTQTHQIAARKEKQMEKLRAALGITSPDVDTEKQDNLGESGIDIDDDEKQRRNREGSDDSSECEEGEILHGDEDIKSEKYSQDDDKSKKQGGMRREQNRRRKHGYESLDSESDKEQTSESETDSEQERKRKHKSTKMPEQIVSDDSDDSGSDSDEPNRGLRKDAGRHKRGHKRHDTSSESDQSSRSPDYRTMKSKHKLGKGRYDSEDEHDVGASKRKTTANKDREFAGSHKDKKSALDRGDYGRRHEDRYNKSSDRLRHDSGSDSDMRAKPEKRAPERSRKSRRHDTDEDDSDSGEDIKEQRRRRVKRDSEDNSDIETIRKATNDQKGKVELKMRGGNKDAGNYVKKNSHQYEDDKRRHNRIEDVGFRKRDRREEDEYVTKRSENRDGNLQRGRKKEREEQNDQQRRRRDEEDYHGRRKLEKEEDDNERRGVVRKEDDDHDRRRRERKEEGVHERRKRDGKEEGDYERRKREMEEEEHQRRKLEKEEDNERSRKVEGREEDAHKSRKRERLQESEHGNRRHDDRDGDEQKDRKQERREEDRKRSRRDEDEQGAQNRERRDEDEKRGRKYERREEDELRSRKRDRGEEGDHVVRKRERREEEEHVNHNPERRGQEQSGRDEEREQDDLEHKIREKREEEDRRGRRHQKDRDSSRRLRSDDVRGRYETDRRDDERRRR*

Click here to download the sequence:
Link to NCBI Protein BLAST