Transcript Information: S_Transcript_126565.p1


Annotated TAIR IDAT1G80170.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:30153646-30155683 | Reverse length=444
E-Value7.4E-155
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5727042754078
Replicate 23.7476519248381
Replicate 32.6779863354269
Condition 2: 8 Hour
Replicate 13.7392465213603
Replicate 23.7388568959543
Replicate 35.7231590829813
Condition 3: 24 Hour
Replicate 13.4113927642846
Replicate 22.2353348404069
Replicate 31.3820298304173


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_126565.p1 GENE.S_Transcript_126565~~S_Transcript_126565.p1 ORF type:3prime_partial len:365 (+),score=46.05,Glyco_hydro_28|PF00295.13|7.5e-82,Pectate_lyase_3|PF12708.3|4.9e-07 S_Transcript_126565:288-1379(+)
ATGAAATCCCCCATTAATTCAACCTCTTGTTGTTCAGATTGTGTTGTTAAATTGTTGGTCATTATTACTATAAGTGTGCTGTTGAATGTTAGTAACACAGTGGCATTTGAGTCTTTTTTGAAGCTCCCATTATCTGGGTTCTCTAGAAACAGACCCAGAATTGAAAGGGTTGTTCATGTTAATGCCTATGGAGCTGCAGGTGATGGGATTCATGATGATACTGAGGCTTTCAGAAATGCATGGAAAGTGGCATGTTCTTTGTCTCAGCGATCAACAATCGTCATTCCAGAGGGATACACTTATAAGGTGCAACCAATCGGTTTTGCTGGGTGCCAAGCCAGGGTGACTCTAAGGATTCTGGGTGCGATTGTTGCTCCTAAACATCCTGAAGCATGGCTTGGTTTGAACCCTCGCAAGTGGCTTTATTTCCATAGTGTAGAGCATCTAACTCTAGAAGGTGGAGGGACGATCAATGGGATGGGTGAGGAGTGGTGGAAACTGTCTTGCAAGTTCAATGCAACAATTCCTTGTCATCATGCTCCTACGGCTATCACTTTTCACAGGTGCAAGGATTTAACTGTCACAAATATCAATATCGTTGACAGTCAACAAACACACATGTCTTTCACTAATTGCATCGGCATTATGGTGTCCAATGTCACAATTACAGCACCAGCTGAAAGTCCTAATACAGATGGAATCCACATAAGTGCGTCCACTCATGTTGAAGTAATAGATACTACTATTGGAACAGGAGATGATTGTGTGTCTATGGTGAGCAATTCTTCAAAAATTCTAATTTCTGATGTTATTTGTGGTCCTGGCCATGGCATAAGTATTGGGAGCCTAGGGAAATCACATGAATGGTCCGAAGTGCACGATGTGACTGTTGATCATGTGTACTTATCTGGTACTCAGAATGGTGTGCGAATCAAAACCTGGCAGGGTGGTGCAGGTTTTGTAAGAAGGATTATGTTCCGCGATGTGTGGATGGAGAATGTCTCAAATCCAATTCTAATTGATCAATATTACTGTGATGGGCCAAAGCCATGCCAAAATCAGACATCCGCGATAAAAGTTGACGACATATCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_126565.p1 GENE.S_Transcript_126565~~S_Transcript_126565.p1 ORF type:3prime_partial len:365 (+),score=46.05,Glyco_hydro_28|PF00295.13|7.5e-82,Pectate_lyase_3|PF12708.3|4.9e-07 S_Transcript_126565:288-1379(+)
MKSPINSTSCCSDCVVKLLVIITISVLLNVSNTVAFESFLKLPLSGFSRNRPRIERVVHVNAYGAAGDGIHDDTEAFRNAWKVACSLSQRSTIVIPEGYTYKVQPIGFAGCQARVTLRILGAIVAPKHPEAWLGLNPRKWLYFHSVEHLTLEGGGTINGMGEEWWKLSCKFNATIPCHHAPTAITFHRCKDLTVTNINIVDSQQTHMSFTNCIGIMVSNVTITAPAESPNTDGIHISASTHVEVIDTTIGTGDDCVSMVSNSSKILISDVICGPGHGISIGSLGKSHEWSEVHDVTVDHVYLSGTQNGVRIKTWQGGAGFVRRIMFRDVWMENVSNPILIDQYYCDGPKPCQNQTSAIKVDDIS

Click here to download the sequence:
Link to NCBI Protein BLAST