Transcript Information: S_Transcript_127544.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value2.4E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.17650231646012
Replicate 30.1475418886688
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30.3410535616797
Condition 3: 24 Hour
Replicate 10.17475906792475
Replicate 20
Replicate 30.20177635524093


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_127544.p1 GENE.S_Transcript_127544~~S_Transcript_127544.p1 ORF type:5prime_partial len:125 (+),score=27.90,Plant_NMP1|PF06694.7|3.9e-33 S_Transcript_127544:2-376(+)
ATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATCTATCCCTTACCAGATATTGCTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAAGTTTGTTGCTCTAATCTTAAGATTATTGTTCACTGCAGCTTGCTTCGCGTATATGCTGTGTTGTTCTTTCGCCTTTTCTTCCTTTTGAACTTCATCCCTAGCTTTGATCTTTTTGGTTTCAGCATCCTTACAATCCGGATGAAGATTATACAGAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_127544.p1 GENE.S_Transcript_127544~~S_Transcript_127544.p1 ORF type:5prime_partial len:125 (+),score=27.90,Plant_NMP1|PF06694.7|3.9e-33 S_Transcript_127544:2-376(+)
IDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIADLESKLSELSKKLLTLQQNVDDLASKVCCSNLKIIVHCSLLRVYAVLFFRLFFLLNFIPSFDLFGFSILTIRMKIIQK*

Click here to download the sequence:
Link to NCBI Protein BLAST