Transcript Information: S_Transcript_127545.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value8.1E-194
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.7437071688086
Replicate 24.4658818741797
Replicate 34.0674312208545
Condition 2: 8 Hour
Replicate 17.2158420408426
Replicate 27.4347533243805
Replicate 37.8565963982106
Condition 3: 24 Hour
Replicate 12.2438853132332
Replicate 23.5604779515712
Replicate 34.6481713254142


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_127545.p1 GENE.S_Transcript_127545~~S_Transcript_127545.p1 ORF type:complete len:331 (+),score=80.98,Plant_NMP1|PF06694.7|8.9e-188 S_Transcript_127545:220-1212(+)
ATGGCGGCGAAGCAAATGGAGGAGATACAAAAGAAGTTGACGACTTTGAATTATCCGAGAGCAAATGCACCTGCTCAGTCTTTGCTCTTTGCTGGCATGGAACGTTACGCCCTTCTTGAATGGCTCTTCTTCAGGTTGTTGGGCGACAAGCCGCCTTTCTCTCAACAAAATTTGCAAGGAGATGGTGTTGATCGTGATGAAGAGTCTTCTCGGATTCCGTACTTGGCAGAAATTGCAAAGTTTCTGGGTATCACAACGACAGTGGATACAGAGATCATTCAAGGACGTGGAAGTTATGAAGATCGCACAGAAATGCTTAGGCATATCGTAGATCTTGTTGAGGCGAGCATCTATGCTGATAATCCTGATTGGAGTATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATCTATCCCTTACCAGATATTGCTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAGCATCCTTACAATCCTGATGAAGATTATACAGAAGTAGAAAGAAAACTGCGTTCACATTTGGAGTCTTTTCTGGAAACTGCACGATCCTTTAACGTGATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAGTTACCACAGCTTCATGGTTTTGGTCCTGCTGCAAATCGGCTGTTGGAGGCCTATAAAATGCTGCTGAAGTTTCTGGGGAATTTGAGGAATCTTCGTGATTCACATGCTGCAGTTGCAGCTGGGTCATCCGAGACAGTAGGAGGTGAGCCTTCTTCTGTGATGAGGATAATCTCCGAGTGTGAATCAGCCCTTACATTGTTAAATCGGGATCTTGGTATCCTTTCGACTTCGATTGCTCGTGAACGGGGTGAGCTGACATCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_127545.p1 GENE.S_Transcript_127545~~S_Transcript_127545.p1 ORF type:complete len:331 (+),score=80.98,Plant_NMP1|PF06694.7|8.9e-188 S_Transcript_127545:220-1212(+)
MAAKQMEEIQKKLTTLNYPRANAPAQSLLFAGMERYALLEWLFFRLLGDKPPFSQQNLQGDGVDRDEESSRIPYLAEIAKFLGITTTVDTEIIQGRGSYEDRTEMLRHIVDLVEASIYADNPDWSIDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIADLESKLSELSKKLLTLQQNVDDLASKHPYNPDEDYTEVERKLRSHLESFLETARSFNVIYTKEIRPWTHMMELPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAAVAAGSSETVGGEPSSVMRIISECESALTLLNRDLGILSTSIARERGELTS*

Click here to download the sequence:
Link to NCBI Protein BLAST