Transcript Information: S_Transcript_127546.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value1.7E-161
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.23482059913395
Replicate 20.12978111504421
Replicate 30
Condition 2: 8 Hour
Replicate 10.25088694490745
Replicate 20.13159910964545
Replicate 30.68963036369057
Condition 3: 24 Hour
Replicate 10.12849931465055
Replicate 20
Replicate 30.14836496708892


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_127546.p1 GENE.S_Transcript_127546~~S_Transcript_127546.p1 ORF type:complete len:340 (+),score=81.30,Plant_NMP1|PF06694.7|9e-161 S_Transcript_127546:837-1856(+)
ATGAAAGCATGTACAAGTATGTTCTGTTCAAATTATGTGGCAATCACATCTACTGCCCCTCCTGGTTTCTTGTGTGGGGTTGTTTCTGAAAGGCAGTCATTTGCTTACCCTAAACCTCCACCAGAGAATCTGAGAAAATGTTTCTCTATTATTGTTTGTAGGTTGTTGGGCGACAAGCCGCCTTTCTCTCAACAAAATTTGCAAGGAGATGGTGTTGATCGTGATGAAGAGTCTTCTCGGATTCCGTACTTGGCAGAAATTGCAAAGTTTCTGGGTATCACAACGACAGTGGATACAGAGATCATTCAAGGACGTGGAAGTTATGAAGATCGCACAGAAATGCTTAGGCATATCGTAGATCTTGTTGAGGCGAGCATCTATGCTGATAATCCTGATTGGAGTATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATCTATCCCTTACCAGATATTGCTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAGCATCCTTACAATCCTGATGAAGATTATACAGAAGTAGAAAGAAAACTGCGTTCACATTTGGAGTCTTTTCTGGAAACTGCACGATCCTTTAACGTGATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAGTTACCACAGCTTCATGGTTTTGGTCCTGCTGCAAATCGGCTGTTGGAGGCCTATAAAATGCTGCTGAAGTTTCTGGGGAATTTGAGGAATCTTCGTGATTCACATGCTGCAGTTGCAGCTGGGTCATCCGAGACAGTAGGAGGTGAGCCTTCTTCTGTGATGAGGATAATCTCCGAGTGTGAATCAGCCCTTACATTGTTAAATCGGGATCTTGGTATCCTTTCGACTTCGATTGCTCGTGAACGGGGTGAGCTGACATCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_127546.p1 GENE.S_Transcript_127546~~S_Transcript_127546.p1 ORF type:complete len:340 (+),score=81.30,Plant_NMP1|PF06694.7|9e-161 S_Transcript_127546:837-1856(+)
MKACTSMFCSNYVAITSTAPPGFLCGVVSERQSFAYPKPPPENLRKCFSIIVCRLLGDKPPFSQQNLQGDGVDRDEESSRIPYLAEIAKFLGITTTVDTEIIQGRGSYEDRTEMLRHIVDLVEASIYADNPDWSIDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIADLESKLSELSKKLLTLQQNVDDLASKHPYNPDEDYTEVERKLRSHLESFLETARSFNVIYTKEIRPWTHMMELPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAAVAAGSSETVGGEPSSVMRIISECESALTLLNRDLGILSTSIARERGELTS*

Click here to download the sequence:
Link to NCBI Protein BLAST