Transcript Information: S_Transcript_127547.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value2.8E-82
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.15841072163798
Replicate 20.6566306415927
Replicate 30.10977819097381
Condition 2: 8 Hour
Replicate 10.76162108275475
Replicate 20.66582882856329
Replicate 30.38064013580324
Condition 3: 24 Hour
Replicate 10.26005813679279
Replicate 20.1349036403354
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_127547.p1 GENE.S_Transcript_127547~~S_Transcript_127547.p1 ORF type:5prime_partial len:168 (+),score=33.79,Plant_NMP1|PF06694.7|2.2e-81 S_Transcript_127547:2-505(+)
ATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATCTATCCCTTACCAGATATTGCTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAACATCCTTACAATCCGGATGAAGATTATACAGAAGTAGAAAGAAAACTGCGTTCACATTTGGAGTCTTTTCTGGAAACTGCACGATCCTTTAACGTGATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAGTTACCACAGCTTCATGGTTTTGGTCCTGCTGCAAATCGGCTGTTGGAGGCCTATAAAATGCTGCTGAAGGTATTGCATTGCATGTTTTTTTGGTTTAGTAATTCTGCACTTTCTCACACACTGCATCATCTCTACCTCACAAATGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_127547.p1 GENE.S_Transcript_127547~~S_Transcript_127547.p1 ORF type:5prime_partial len:168 (+),score=33.79,Plant_NMP1|PF06694.7|2.2e-81 S_Transcript_127547:2-505(+)
IDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIADLESKLSELSKKLLTLQQNVDDLASKHPYNPDEDYTEVERKLRSHLESFLETARSFNVIYTKEIRPWTHMMELPQLHGFGPAANRLLEAYKMLLKVLHCMFFWFSNSALSHTLHHLYLTNE*

Click here to download the sequence:
Link to NCBI Protein BLAST