Transcript Information: S_Transcript_127549.p1


Annotated TAIR IDAT5G17620.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5805934-5808455 | Reverse length=329
E-Value2.5E-163
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.8475478100376
Replicate 20.35131830505597
Replicate 30.29367414145861
Condition 2: 8 Hour
Replicate 11.6299661388891
Replicate 21.0687188840634
Replicate 30.54307891987214
Condition 3: 24 Hour
Replicate 10.90440600438766
Replicate 20.36088871936859
Replicate 30.1606499643638


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_127549.p1 GENE.S_Transcript_127549~~S_Transcript_127549.p1 ORF type:complete len:314 (+),score=72.51,Plant_NMP1|PF06694.7|3.1e-161 S_Transcript_127549:510-1451(+)
ATGTATCATTGTTTATTGCTGCCAAGTTGGTGCCAAAATTTCAGGAAGATATTGAGCTCATTACCAGATGAAAGCATGTACAAGTTGTTGGGCGACAAGCCGCCTTTCTCTCAACAAAATTTGCAAGGAGATGGTGTTGATCGTGATGAAGAGTCTTCTCGGATTCCGTACTTGGCAGAAATTGCAAAGTTTCTGGGTATCACAACGACAGTGGATACAGAGATCATTCAAGGACGTGGAAGTTATGAAGATCGCACAGAAATGCTTAGGCATATCGTAGATCTTGTTGAGGCGAGCATCTATGCTGATAATCCTGATTGGAGTATTGATGAGCAGGTGACAAAGGACACACAGCTAATTGATTCTATTGCAGAAAGGCAAGCACAAATTTTCTCAGAAGAGTGCAAACTCTTTCCTGCAGATGTGCAGATTCAGTCCATCTATCCCTTACCAGATATTGCTGATTTGGAATCCAAACTGTCAGAACTGTCAAAGAAACTCCTGACTCTCCAACAAAATGTTGATGATTTGGCTTCAAAGCATCCTTACAATCCTGATGAAGATTATACAGAAGTAGAAAGAAAACTGCGTTCACATTTGGAGTCTTTTCTGGAAACTGCACGATCCTTTAACGTGATATACACTAAGGAAATACGCCCTTGGACACACATGATGGAGTTACCACAGCTTCATGGTTTTGGTCCTGCTGCAAATCGGCTGTTGGAGGCCTATAAAATGCTGCTGAAGTTTCTGGGGAATTTGAGGAATCTTCGTGATTCACATGCTGCAGTTGCAGCTGGGTCATCCGAGACAGTAGGAGGTGAGCCTTCTTCTGTGATGAGGATAATCTCCGAGTGTGAATCAGCCCTTACATTGTTAAATCGGGATCTTGGTATCCTTTCGACTTCGATTGCTCGTGAACGGGGTGAGCTGACATCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_127549.p1 GENE.S_Transcript_127549~~S_Transcript_127549.p1 ORF type:complete len:314 (+),score=72.51,Plant_NMP1|PF06694.7|3.1e-161 S_Transcript_127549:510-1451(+)
MYHCLLLPSWCQNFRKILSSLPDESMYKLLGDKPPFSQQNLQGDGVDRDEESSRIPYLAEIAKFLGITTTVDTEIIQGRGSYEDRTEMLRHIVDLVEASIYADNPDWSIDEQVTKDTQLIDSIAERQAQIFSEECKLFPADVQIQSIYPLPDIADLESKLSELSKKLLTLQQNVDDLASKHPYNPDEDYTEVERKLRSHLESFLETARSFNVIYTKEIRPWTHMMELPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAAVAAGSSETVGGEPSSVMRIISECESALTLLNRDLGILSTSIARERGELTS*

Click here to download the sequence:
Link to NCBI Protein BLAST