Transcript Information: S_Transcript_12789.p1


Annotated TAIR IDAT3G03790.3
Annotated Gene Nameankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:963195-968011 | Forward length=1099
E-Value7.3E-240
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.0383777779858
Replicate 211.499708708044
Replicate 312.744626586073
Condition 2: 8 Hour
Replicate 114.485170781449
Replicate 213.03265710852
Replicate 315.03169441955
Condition 3: 24 Hour
Replicate 119.577961618929
Replicate 215.127025179496
Replicate 318.500131627337


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12789.p1 GENE.S_Transcript_12789~~S_Transcript_12789.p1 ORF type:complete len:424 (+),score=100.03,RCC1|PF00415.14|1.4e-07,RCC1|PF00415.14|3.2e-08,RCC1|PF00415.14|9.1e-13,RCC1|PF00415.14|2.1e-12,RCC1|PF00415.14|32,RCC1|PF00415.14|1.2e+04,RCC1_2|PF13540.2|1.7e+02,RCC1_2|PF13540.2|0.025,RCC1_2|PF13540.2|6.3e-06,RCC1_2|PF13540.2|4.8e-05,RCC1_2|PF13540.2|0.019,Ank_5|PF13857.2|6.6e-09,Ank_5|PF13857.2|0.0048,Ank_4|PF13637.2|3.3e-05,Ank_4|PF13637.2|1.1e-07,Ank_2|PF12796.3|6.1e-11,Ank|PF00023.26|4.2e-05,Ank|PF00023.26|0.79,Ank_3|PF13606.2|0.00081,Ank_3|PF13606.2|0.32 S_Transcript_12789:838-2109(+)
ATGTTGATGGAGGGATTAATTTCTCCTCAGGGTCACAAGCATAGTCCGCAAAGTCATGGTCGCAAATCTTCATTGGCTGCGAATCATAGGGATATCTGGCTTCTTGTGAGAGAAGGTTCTTTGGCTGATGTCGAATTAGCTTTGACGCAATTGAAGAAGAATGGTGGTAATATCAACTCAAGGAATGCATTTGGCCTTACTCCACTGCATATTGCTACTTGGCGAAATCACATCCCTATTGTTAGAAGGCTCCTTGATGCTGGTGCAGACCCCGATGCTAGGGATGGAGAATCTGGTTGGAGTAGTCTTCACAGGGCTTTGCATTTTGGTCACCTTGCTGTGGCAAGTGTCCTCCTCCAGTTTGGGGCTTCTCCCGCGATAGAGGACTCCAAATTACGAACACCTGTTGATCTCCTTTCTGGACCTGTATCACAGATACTGGGTGATCAACATGCTTCAGTCACAACTGAGATCTTTAGTTGGGGAAGTGGTACTAATTATCAACTTGGAACGGGAAATGCTCACATTCAGAAGTTACCTTGCAAACTTGACGAACTTCATGGTTCGACCATCAAACTGATTTCTGCTTCAAAATTTCATAGTGTGGCTGCCACTGGTCGTGGAGAACTATACACTTGGGGATTTGGGAGGGGTGGTCGCCTTGGACATCCTGAATTTGACATTCACAGTGGTCAGGCTGCAGTTATTACACCAAGACAGGTGATTTCCGGTCTTGGTTCTCGTCGAGTCAAGGCAGTTGCTGCAGCTAAACATCATACTGTCATTGCAACTGAAAGTGGGGAAGTTTTCACTTGGGGTTCTAATAGAGAGGGTCAACTTGGCTATGCTTCTGTGGACACCCAACCAACCCCACGTAGGGTTAGTTCTTTGAAGGGAAGGGTAGTAGCAGTTGCTGCAGCAAATAAACACACTGCTGCAGTTTCTGAGATGGGTGAAGTATTCACGTGGGGCTGCAACAAGGAAGGTCAACTTGGCTATGGCACGTCAAACTCGGGTTCTAATAATACTCCTAGATTGGTTGAATATTTGAAAGGCAAGGTTTTTAAAGGGGTAGCTGCTGCAAAATATCATACAATTGTTCTTGGAGCAGATGGGGAGGTTTTCACCTGGGGTCATCGACTTGTCACACCAAGACGTGTGGTTGTTTCCAGGAATCTGAAGAAAAATGGGAACACTTTAATGAAATTTCACAGGAAGGAGCGACTTCATGTTGTTGGCATAGCAGCAGGCATGGTACCAGCATGGCGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12789.p1 GENE.S_Transcript_12789~~S_Transcript_12789.p1 ORF type:complete len:424 (+),score=100.03,RCC1|PF00415.14|1.4e-07,RCC1|PF00415.14|3.2e-08,RCC1|PF00415.14|9.1e-13,RCC1|PF00415.14|2.1e-12,RCC1|PF00415.14|32,RCC1|PF00415.14|1.2e+04,RCC1_2|PF13540.2|1.7e+02,RCC1_2|PF13540.2|0.025,RCC1_2|PF13540.2|6.3e-06,RCC1_2|PF13540.2|4.8e-05,RCC1_2|PF13540.2|0.019,Ank_5|PF13857.2|6.6e-09,Ank_5|PF13857.2|0.0048,Ank_4|PF13637.2|3.3e-05,Ank_4|PF13637.2|1.1e-07,Ank_2|PF12796.3|6.1e-11,Ank|PF00023.26|4.2e-05,Ank|PF00023.26|0.79,Ank_3|PF13606.2|0.00081,Ank_3|PF13606.2|0.32 S_Transcript_12789:838-2109(+)
MLMEGLISPQGHKHSPQSHGRKSSLAANHRDIWLLVREGSLADVELALTQLKKNGGNINSRNAFGLTPLHIATWRNHIPIVRRLLDAGADPDARDGESGWSSLHRALHFGHLAVASVLLQFGASPAIEDSKLRTPVDLLSGPVSQILGDQHASVTTEIFSWGSGTNYQLGTGNAHIQKLPCKLDELHGSTIKLISASKFHSVAATGRGELYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHHTVIATESGEVFTWGSNREGQLGYASVDTQPTPRRVSSLKGRVVAVAAANKHTAAVSEMGEVFTWGCNKEGQLGYGTSNSGSNNTPRLVEYLKGKVFKGVAAAKYHTIVLGADGEVFTWGHRLVTPRRVVVSRNLKKNGNTLMKFHRKERLHVVGIAAGMVPAWR*

Click here to download the sequence:
Link to NCBI Protein BLAST