Transcript Information: S_Transcript_128620.p2


Annotated TAIR IDAT4G27010.2
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 312 Blast hits to 226 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:13558943-13568296 | Forward length=2402
E-Value2E-156
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.99902820069499
Replicate 20.94324752018572
Replicate 31.2115666040321
Condition 2: 8 Hour
Replicate 13.1576698905452
Replicate 23.8724993474396
Replicate 33.4896643107217
Condition 3: 24 Hour
Replicate 10.38723985332649
Replicate 20.44902233571491
Replicate 30.65750897823556


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_128620.p2 GENE.S_Transcript_128620~~S_Transcript_128620.p2 ORF type:complete len:959 (+),score=193.39,Npa1|PF11707.4|1.4e-64,Npa1|PF11707.4|4.2e+03 S_Transcript_128620:58-2934(+)
ATGGAGGAACCATTTTCCGACGTCGAAGAACCCATCGAAACCTTAGAAAATCAAACTGGGAACAATTTCGAAGATATTCAATCTCAAAACCCTCTCTCTGACATCGAAGACGATGACGAACAAGAAATCGAAAATGTCGAAAAAATCCCTAATTTCGACCCAAAACCCTCACACGAAGCTAAAATACGTGAATTACTACGTAACATTAGTTCAATTGAAGTAAAACTATGTGTTGATGGGTGTAAGGAGTTCAAGAAGCTTCTTAGGGGAAGTTATGGTGGTGAATTGCTTTACGAGTATGTTAGGACTTCGTCGAAATTCACTGAGCTTATGGAGGTTTGGAATCGTAGGCGAGGTAAGACCGGTTTGTGTTATATAATGTCGTTGATTTCTGTGATTTTGAGCCATTCTGAGGGGAGATATAGGCCTAATGATCCTGGTAGGGTAGCGATTAGTCGTGTTTTGGATAAGTTTGCGAGGTCGATTGTTGAGGAGAGGTTGGAGGATGTTTATAAGGAGATTAATAGTAAGGAAGGGAAGCGGCAGAAGGGGGCATTGTTGTTGATGGCTTCGGTTGTGAGTCGTGGTTCGTTGTTGGCTGCTGAGGTGGCGAAGAGTTTTGATTTTAAGCTTCCTGTGTTACCTAAGTTGGCAGAGTATAGTAGGAGGAGGAAGGTGGAGAGAAGGAGGAAGGATTCAACTAGGGAAGCTTTTGTCGAGTTTGCTATGTCGTTCTTGGAGGTGGGGAAACCGGCATTGTTGAAGTGGGTCTTGCAACAGAGGGAAATTTTTTCGGGCATTCTTAGGGGGCTTGGGAAGGATGGCGATGAGTTGGTGGTTTTCGTGTTGTCAACGTTGCGTGATAGGGTTCTAGTTCCTGAGTCTATGGTACCCCCTGGTCTTCGGAGTGTTCTTTTTGGGAGTGTCACATTGGAACAGTTGGCTGATATTTCTGCACGTGAGGGCGGTGGCCCTGGTGCTGAGCTCGGGTACCAGGTTCTCCTTATGGTCTGCACTGATCCTTCCAATGGGTTGATGCCTGACTTGGGTAGGAAACCGACTCCACTCAAGGGAAATCTCAAGCGGCTTGGGGGTTTGATGAAGAAGCTTAAGGCATCGGAGATTGAGTATCACAGAAACCTGCTTCTGGCAATTGTCAATGGGAGACCGGCTCTTGCTTCATCTTATCTAGATGAATTTCCTTACAACCTTGAGGATAACACATCAGCTTCCTGGATTTCCGCAGTCACATTGGGGGCAAATGTGGTTAGGTCAGTGAGCATTGGGATTTCTTGGGATTTTCTTAAACTCCATGATGATCAAGCACTGGCCTTTGATAGTCCAGAAGTGCAGAGTGTTTTTAAATGTGTGTGTCCTCGTCCATTCAGCCGTGTTATAGTCAACAAAGGGTTACTTCACTCAGATCATTTGATCAAGCATGGCACATTAAGGTTCCTGTTGGAGATTCTGAAACTCCTGAACTCCTTCATTGATGCTTTAAGTGTGAACAGATTGTCTTCCCTCAAGCAAAAAGTCCAGGATGAAATTCGGATTCTGCTTCCTGACTCCCAAGTGTTGTTTACATTACTGAGTTCAGTTAGTAGTATGTACCAGCAGTCGAGACCTTCGCTGAAGAGAGCAGCCCATTCAGAAAACATTTGCCAAAATAAATCTACTATTAACAAGAAATTGAAGACTGATGTCATAAACGAGGAAGTCGATATTGTTGTGGGTGGGTTAAATTCTGCTTCTGAAGATAATTTGCCTGAAGATGGTGAAAAACCAAGCAAAGCAGTTTCTATGTTTCAATCCGATGATGATAATGAAAATGAAAATGATGATGAAAAACTCATTGAGATTTGGGCTTCCTGTGAAGACTCTTCTGCTTCAGATGTTGCAAAAAATGCTGATGTGTACTTCTATTGCAAACTGCTTGAAGCTCTCAAGATATTTCATGGGACCTTGCGTGCTGTCTTGGGAGCATCATATGATTTTCTCAAAATTCTTCCAAGTAATCCACTTGAGTTGCCAAGTATTCTGCTGCAGTCTTTGCTGCCCATGTTGATAGAATACCTTGGCTGTTCACAAGATTTATTTTCTGTTATGCTGCCTCCTATCTACAAGCATTTGCAGTCCTTCCTCATTTTGTTGATACATTCATCAGTCAGAGACATAAAAGAGCAAGCATATGTGTTAGCGGAAGCAGCAATAAGGAGTACTGGTGCATTTGATCACAATCCTTGGGAAATTTGGGCATGGTTCTTGTATTTACCAGGGTTTGTTGGGCATGGTATTTGTAGAGAAGACCAAGAGATTGAATTTTTCCAGAGCTTGTCTTCACCAGTTATGTCGTTCCTCTGTGACGCTGTATCCACTGTTGGAAATAATTTGTTTAAGTACTGTGCTCTTCTGAAGTGTAGCATTTCCAATCTAGAAGTTGTCAAAGAGAAAAACGTTGATTTCAGCCCACTTGTAATCTGTATGCTGGAGAAATGTCTACGGCTGCTTAGTTCTGGGTCCGGAACATTCACCTTGCCTGAGAAATCGATGATATCCTTGTATGTGTGTAACACTTTGAAATATCTTTTGCAAACTCAGGTTGAAGCTGGAATATTAGCTACTGTTATCCACCAATTATTATCAGAGAAGATTGAGGACCGTATCTGTGCAGTTGCCGATGCTCAAAGTGACTTTTGTGAATGGAGACCATTAGTCTCTTTGTTTCATTTTACAGGGAGCATATTGTGTCAAGAAACATGCAATGCTTGCTCCATTGATAGAGTTTCTCTTGGTACAAGCAGTTCTTTTTTTCAAACAATTTCTGAGGTGAAAAAGTCTGTTGACTGCAGGCTGCACCGAGGTAGTTGGAATATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_128620.p2 GENE.S_Transcript_128620~~S_Transcript_128620.p2 ORF type:complete len:959 (+),score=193.39,Npa1|PF11707.4|1.4e-64,Npa1|PF11707.4|4.2e+03 S_Transcript_128620:58-2934(+)
MEEPFSDVEEPIETLENQTGNNFEDIQSQNPLSDIEDDDEQEIENVEKIPNFDPKPSHEAKIRELLRNISSIEVKLCVDGCKEFKKLLRGSYGGELLYEYVRTSSKFTELMEVWNRRRGKTGLCYIMSLISVILSHSEGRYRPNDPGRVAISRVLDKFARSIVEERLEDVYKEINSKEGKRQKGALLLMASVVSRGSLLAAEVAKSFDFKLPVLPKLAEYSRRRKVERRRKDSTREAFVEFAMSFLEVGKPALLKWVLQQREIFSGILRGLGKDGDELVVFVLSTLRDRVLVPESMVPPGLRSVLFGSVTLEQLADISAREGGGPGAELGYQVLLMVCTDPSNGLMPDLGRKPTPLKGNLKRLGGLMKKLKASEIEYHRNLLLAIVNGRPALASSYLDEFPYNLEDNTSASWISAVTLGANVVRSVSIGISWDFLKLHDDQALAFDSPEVQSVFKCVCPRPFSRVIVNKGLLHSDHLIKHGTLRFLLEILKLLNSFIDALSVNRLSSLKQKVQDEIRILLPDSQVLFTLLSSVSSMYQQSRPSLKRAAHSENICQNKSTINKKLKTDVINEEVDIVVGGLNSASEDNLPEDGEKPSKAVSMFQSDDDNENENDDEKLIEIWASCEDSSASDVAKNADVYFYCKLLEALKIFHGTLRAVLGASYDFLKILPSNPLELPSILLQSLLPMLIEYLGCSQDLFSVMLPPIYKHLQSFLILLIHSSVRDIKEQAYVLAEAAIRSTGAFDHNPWEIWAWFLYLPGFVGHGICREDQEIEFFQSLSSPVMSFLCDAVSTVGNNLFKYCALLKCSISNLEVVKEKNVDFSPLVICMLEKCLRLLSSGSGTFTLPEKSMISLYVCNTLKYLLQTQVEAGILATVIHQLLSEKIEDRICAVADAQSDFCEWRPLVSLFHFTGSILCQETCNACSIDRVSLGTSSSFFQTISEVKKSVDCRLHRGSWNI*

Click here to download the sequence:
Link to NCBI Protein BLAST