Transcript Information: S_Transcript_128623.p1


Annotated TAIR IDAT4G27010.2
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 312 Blast hits to 226 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:13558943-13568296 | Forward length=2402
E-Value5E-298
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5281747807617
Replicate 21.4960107763495
Replicate 31.5997975100008
Condition 2: 8 Hour
Replicate 13.8690537105611
Replicate 23.5669227214225
Replicate 33.9584713939611
Condition 3: 24 Hour
Replicate 10.64053415244259
Replicate 20.96913061108388
Replicate 30.61629919132843


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_128623.p1 GENE.S_Transcript_128623~~S_Transcript_128623.p1 ORF type:complete len:1637 (+),score=319.41,NopRA1|PF16201.1|1.8e-48,NopRA1|PF16201.1|1e+03 S_Transcript_128623:2975-7885(+)
ATGTTAGAAAATCTACCATCACTTATGAGTGTTTCAGGGAAACTCCCTGGGTTTCATCAGTCTTTCATGAACTATCTGTTTCATGATCAAAACCTCATGAACTATGTATCTAAGTTATGGCCTGACATGTTATCTTCTGGGCTTGCTCTCAGTGTTGTAGCATCTGCTCAATCAAGCCGTGATATTGACAATCAAACTTCAGCGAAGACTCGGTGTATAGATTTTGAGTCTGCAGAATATGCTTCTGCAGTATTTAGTTCTTTCTTGAATGAGGTACCATTTTATATGTTATTTCCTGCAATTATCGTCTGTGGCCAGCAACATTACTCGAAAATGAAAGAGCTGCTTGAAGATAAGCTATTGAACTTGACAAATGAGCAAATTGTTTCTTCACTTAGGCTAGTGCTTTTTTGGTTTCATCAGATTCAATGTTCCTATAAAAAGAAGCCATCTGAACAGCAGGAACACCTTTCTGAAATATGTTATATACTTGTGGAACGTATTTTGGCTCGTTTGTCGATGCTCAAAGTTAATATCGGATTTGAAAGAGCTGCAGGAATCCCTCTGTCTATTTGTGTTCAAGAAGTTACTAAAACAATCTTTTGTCACCCTGCAATCGCTGCAGCAATGTCATGCTCTCTTGGTCGTGATTATGAACTTGGTGAAGAATTACTGCGGGATGGTTCAGAGGGGCTTCTACGTCTCTGTGGAGAAAGAATTAGTAAAATAGATCTGCATGTTTTGAAGTTATTAACTGTTACATCTGATTCTTTATTAGCTCTTTTTGATGGGGAAAATGCATATACCAACAGGGATAGTATTTTGACGACATTTAGGGATTTGATGCAGTGCATAATTATGAAATTTAAGGCAGACTTTAAGCTTTGGTGCATATCCTGGAATGCAGCCTTCCTGCCGGTCTTATATGCTGTTCTTTCTTTGATGCGCTTTATTTCACCCATTGAGCTGCTTGAATTGGCAAACTGGATGTTGGCTGGAGTAGAATTTTCTGATTCCAAGCTTTCGAGAACCTCTTCCAGTGTTTTTCCTGCATCACTGGGGTATTATATTGCTTCTGCAGCTTTTGACATGTTATCTGAATATTTGCAACCTCAAGATATGAAATCAATGGCAAGTGGTTATTTATGGGTTATTAGAAAAGAGAGTTTTGATGCCAACTTGTTTGAAAGGATATATTTGAAGGCTTATGAATCTGCAAGTAGTTTTGAACTTGACTCTGCAGATATATGCATGCTTAAAGCTCTCAGGGCAGCCCACAACCTAACATCTTGGCAAGAGCTACTCCCAATAAGTATGGAAATGACAAGGATAATCGCCAACACTCCTATCAAAATACTCTCACATTGTATTCATAGGACTAACAGTACTAAGGCAAAGTTATTGTATCTGATGATTGAGATCAGTCCATCACATTTGTCAGTTTTTGGTCACTTGTTCTTTGATATTTTGAGCAAAGACTTTTCTCCTAGGGTAAATCTAGCTGCAGATGTTGATAATCAATCTCTTTCTGATGAAGAATATTTGATGCTTATGCCAGCTGCAGTCTCATACTTAAATACTTCCAGAAGAAAAAGTGGTCTCATACATGATTTCAGAAAGCAGTCCTTCAGCAATCTTGATTATGTGTCTTCTTTCTATTCAAGGATTCTCTTGGATGGTTTCTTTAATTGGAAGTACTTAGTGTGTCGAACTCCATTTCAGGTGGAGTGTGATAAAATTGAGCCTTGCTCTGTTGAGAATCTTCATGAGACCTTCACTAATAGTCTCCTTGGAAAAGCAGTTAATATGATAAGGTGGTACTTCGCCACAAATGGGGATTATATGGACAAGCGCTTGAAGTTATTTTGCTCAATATGCCCTTCTTCTGGTTCACTGGATGATTTTTTGGACTTTAATCTAGGAGACATTGATTCTTGTTCATTTGAACAACTACTGAACTTAACGAACAGAGTTGTTGCTAAACTTTCTCTTTCTTTGGTGCTGTTATTTCCTGGTTGTAGCGAGAATCATCCATCAAATGGAACACATGATGAAGATGCTGAATCTGCTGAGGGGTTATATGATGAAGACTCTTTAAGAATGAGATTTTTAGATATGTTGGTTTCTTGCTGGCAACTTGTTGTGAAGAAATTCCCATCTGCCTCTGACTTTTCTGGAGAGAAGAGTGACATCTTTTTGTTGTTGAGATCTCTAGAAGTGTTTGTACTGAGATGTATATATAAATTGACAAAGGAGATGCATAATTACTTTATTCAGATGGATTCACTTCCCTTTCTGGAAAAGATGGCAAAGATTTCTCTTCTTCATAGGTTTGGTGATCCTAACACATTGCAAACTCTTCGGCATATTTTCTCATCTTTGTCGGATGGGAATTTGCCTATTCTTTTATTTCTTCAGCTTCTTCTTGGGCATTCAAAGTTGCCCCCAACTATTGCTTCCATTGTTGAGTCATCTATGTCTACTGTAGTTGGGATGACTGTGAAGCCCATATCTAGCTTTTTGAGGTCATTAAATATCCCTTCTGAAAGGAGACACTCAGAAACATGTAATAGATACAAGGGACAGCTGGAGGTCATTAAGTTGCTCCGACTATTGTTTCATTTAAGCTCTTACCAGCAAAGTTCATTTCCTGAAGACGATTTTGGCATATATTTGAGAGAATTACTTAAGTTGCTTTTGCCTTCTTACGGTGCCACACTTAGTGAAATGGATTTGGAGATATATGGTCTTCTTTCCGAAATTGAGTCTGCTATAGGAGCAGAACAGAAAATAGTTGCTGAGCTAGATTACCTGTGGGGAAGTGCCGCTCAGAGAGTTGGAAAAGAGCATCTAATGGAGCTTGATTTGCTGAATAATGATGTGGAAGATGCAGAAGAGGATCGCAGACGAAGTCTGTTCAGGGATAATCTTCCAATTGATCCCAAGTTATTGATCGTGACAATCCTATATTTTCCATATGGAAGGACTATATCTAAAACTTCATTGCTCTTGGATGGTTCAAATGAAGATAATGTCAGCAATATGGTGGAGGGTCACTTCACAGAACTTGGGAGCTTAGACCTGTATGATCCAGTTTTTGTTTTGTCCTTCTCCATTCATGCCTTGTCAATGGGTTACTTGGATCCTGTGGAGTTCACTGGTGTGGGCTTGCTTGCTGTTGCATTAGTTAGCATAGCATCACCTGAAGAAGGCATAAGAAAGTTGGGTTATGAGGTTCTTAGCAGATTCAATAGTGCATTGAAGGGATGTCAAAAGAAGAGGGAAGTGACCAGAATTAAGCTGTTGTTGACGTATTTACAGAATGGAATAGAAGAAGTATGGCAAAAAATTCCCACCATTACTGCTGTTTTCATTGCAGAGGCTTCTGTCATATTGCTGGATCCTTCCCATGATCAGTATTCAGCCATTAGTAAGCTCCTGATGCAGTCTCCACGGATGAATTTGAAGTCCATACCTTTGTTCCATGATGTTGTCTGGAGTAGCTCTGTGAACTTCAGAACAGACAGACTTTGGGTGCTTCGACTTCTATATGCAGGGTTTAATTCAGAAGATGATGCTCAAATATATATCAGGAATTCAGTTCCTGAGATTTTATTGAGTGTTTATGCTTCTCCTCTTTCGGATATTGAGGCAAAGGAGTTGATTCTTCAGGTGGTGAAGAAGTGTGTTAAAGTGCAGAAGATGGCACGTTATCTAATTGAGAACTGTTGTCTTATTTCATGGTTATCTTCAGTTCTTTCCTTGTCTTTGAGTGTCACAGATGATGCAGATGGACTTTTCTCGAAACAGTTGGTCCTGTTACTGGAGGTGATCCAGGATATCATTTCATGTATAAGTACTACAGAATGGTTGCAGAAGTTTGCGCTAGAGCAGCTTTCGGATCTCTCATGTCACCTTTTCAGTCTTTTAGTTAGAAGCTCAAAGCTTGTTCAGAAGAATGTGGCCATGGTGTCTTTGATACTGGAAGTAATTGCATCAGCTTTGAAGATATCACAGGAAAGAAAAATATACCAACCACATCTTACGTTGTCAATGCGGAGTTTATATCAACTATATCAAACTGTTGAGCTTTGTGGTAGAGAAAAACCTAGTCAGTGTGCAGAGGTTGGGTTGAAGGCTATTCTTATGAGTGTACCTGCAACAGCGATTTCTGACTTGGATCAAGAAGAGCTCTCGCAGTTTCTCATGTGGGCAGTTTCTACAGCTGTGCAATCAGATTTTATGCTGGAGTTGCAGCAGAAAGACTTTTTTTCAAACACTGAAACTTGCAATCAGGAACACGAACAAGGCTCTCCTATATTAACACTTCTAAGATGGATTGTAGCGTCAGTGATTCTTTGGGCAGTTTCATGCTGCCGTGATGACTCTGACCCGAGATTTCTCTTGAGGGAAGCAAATCGAGAAAGTTTGTTGTCATTAATGAGACACACGGACTACAGATGTGAAGAATCAAAACTCTCATCTGGTTGTAAAGAAATTTTAGCTGTAACTATCTTTCATCTGCAACAGCTTCTTGGCATGAGGTGCACGGTGCTGCCTTCAGTTGTTGCAGCACTCTCTATCTTACTTCTTTCTGATGGTTCGTGTACTGCAGGCTCTGTGACCACTCGTAGCTCGGAAAGTTCTGTATCCTCACTCTGGTCCAAGATTTGCTACCCTCCTGAAGCCAATCCTGCCTGGCAATGGTCAACTCACCAACCATGGGCTGACCATACAATGAAACGTACTGCTATGGAGAAATTAATTGAACTTCATGCATGCCAAAAACTTCTGGCGATAATCTCAGGATTTCTGACAAATAAACCATCTGATTATCATTTACTATCACCTCTAGAATTAGAGTCTTCCGGTTTATTTGAATGGGAAAGAACCAACCTTCTTAAGGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_128623.p1 GENE.S_Transcript_128623~~S_Transcript_128623.p1 ORF type:complete len:1637 (+),score=319.41,NopRA1|PF16201.1|1.8e-48,NopRA1|PF16201.1|1e+03 S_Transcript_128623:2975-7885(+)
MLENLPSLMSVSGKLPGFHQSFMNYLFHDQNLMNYVSKLWPDMLSSGLALSVVASAQSSRDIDNQTSAKTRCIDFESAEYASAVFSSFLNEVPFYMLFPAIIVCGQQHYSKMKELLEDKLLNLTNEQIVSSLRLVLFWFHQIQCSYKKKPSEQQEHLSEICYILVERILARLSMLKVNIGFERAAGIPLSICVQEVTKTIFCHPAIAAAMSCSLGRDYELGEELLRDGSEGLLRLCGERISKIDLHVLKLLTVTSDSLLALFDGENAYTNRDSILTTFRDLMQCIIMKFKADFKLWCISWNAAFLPVLYAVLSLMRFISPIELLELANWMLAGVEFSDSKLSRTSSSVFPASLGYYIASAAFDMLSEYLQPQDMKSMASGYLWVIRKESFDANLFERIYLKAYESASSFELDSADICMLKALRAAHNLTSWQELLPISMEMTRIIANTPIKILSHCIHRTNSTKAKLLYLMIEISPSHLSVFGHLFFDILSKDFSPRVNLAADVDNQSLSDEEYLMLMPAAVSYLNTSRRKSGLIHDFRKQSFSNLDYVSSFYSRILLDGFFNWKYLVCRTPFQVECDKIEPCSVENLHETFTNSLLGKAVNMIRWYFATNGDYMDKRLKLFCSICPSSGSLDDFLDFNLGDIDSCSFEQLLNLTNRVVAKLSLSLVLLFPGCSENHPSNGTHDEDAESAEGLYDEDSLRMRFLDMLVSCWQLVVKKFPSASDFSGEKSDIFLLLRSLEVFVLRCIYKLTKEMHNYFIQMDSLPFLEKMAKISLLHRFGDPNTLQTLRHIFSSLSDGNLPILLFLQLLLGHSKLPPTIASIVESSMSTVVGMTVKPISSFLRSLNIPSERRHSETCNRYKGQLEVIKLLRLLFHLSSYQQSSFPEDDFGIYLRELLKLLLPSYGATLSEMDLEIYGLLSEIESAIGAEQKIVAELDYLWGSAAQRVGKEHLMELDLLNNDVEDAEEDRRRSLFRDNLPIDPKLLIVTILYFPYGRTISKTSLLLDGSNEDNVSNMVEGHFTELGSLDLYDPVFVLSFSIHALSMGYLDPVEFTGVGLLAVALVSIASPEEGIRKLGYEVLSRFNSALKGCQKKREVTRIKLLLTYLQNGIEEVWQKIPTITAVFIAEASVILLDPSHDQYSAISKLLMQSPRMNLKSIPLFHDVVWSSSVNFRTDRLWVLRLLYAGFNSEDDAQIYIRNSVPEILLSVYASPLSDIEAKELILQVVKKCVKVQKMARYLIENCCLISWLSSVLSLSLSVTDDADGLFSKQLVLLLEVIQDIISCISTTEWLQKFALEQLSDLSCHLFSLLVRSSKLVQKNVAMVSLILEVIASALKISQERKIYQPHLTLSMRSLYQLYQTVELCGREKPSQCAEVGLKAILMSVPATAISDLDQEELSQFLMWAVSTAVQSDFMLELQQKDFFSNTETCNQEHEQGSPILTLLRWIVASVILWAVSCCRDDSDPRFLLREANRESLLSLMRHTDYRCEESKLSSGCKEILAVTIFHLQQLLGMRCTVLPSVVAALSILLLSDGSCTAGSVTTRSSESSVSSLWSKICYPPEANPAWQWSTHQPWADHTMKRTAMEKLIELHACQKLLAIISGFLTNKPSDYHLLSPLELESSGLFEWERTNLLKE*

Click here to download the sequence:
Link to NCBI Protein BLAST