Transcript Information: S_Transcript_12867.p1


Annotated TAIR IDAT3G21000.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:7363921-7365138 | Forward length=405
E-Value4E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.1455725743891
Replicate 28.4175301524655
Replicate 37.2585868923408
Condition 2: 8 Hour
Replicate 18.9069903332604
Replicate 28.0412869608656
Replicate 38.3893697401131
Condition 3: 24 Hour
Replicate 110.615385150048
Replicate 28.2372487857809
Replicate 37.6982946778668


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_12867.p1 GENE.S_Transcript_12867~~S_Transcript_12867.p1 ORF type:complete len:498 (+),score=96.19,UBN2|PF14223.2|3.1e+03,UBN2|PF14223.2|1.3e-36,UBN2_2|PF14227.2|2.7e-14,gag_pre-integrs|PF13976.2|4.1e-12,UBN2_3|PF14244.2|2.5e-09,DUF4219|PF13961.2|9.5e-06 S_Transcript_12867:254-1747(+)
ATGGCTAGTAATGGCTCAAATGCATCTCAGCCATTAATCCCACAATTCAAAGGGGACAAATATCACTCATGGAGCCTAAAGATGAAAACTTTGCTCAAATCCCAGGAGCTTTGGGATTTAGTTGAAAATGGGTATGATGAACCGGATCCGGCACCGGCTCAACCTGATCAGCAATTGCGAGAGGCACGCAAAAAGGATGCAAAGGCTCTTCTTTTCATTCAATCGGCAGTGGATGATGAGATATTTCCCCGCATTTCTGCAGCTTCAACCTCAAAGGAAGCATGGGATATCCTGAAACAGGAATACCTGGGTGATAAGAAGGTAATTACTGTTAAGCTCCAATCTCTCCGTCGTGATTTTGAAAATTTGAGCATGAATGAAAAGGAATCTATTCAAAGTTTCCTTTCTAGAGTTTCTGGAATTGTTAATCAAAGGAGAACTTATGGTGAGATTGTCAGTGATGAAACTGTAGTCAGTAAGGTACTGAGGAGTTTACAAAAGGACTTTAATGAAGTGGTAGCTGCAATAGAGATAACTCAGGATTTATCAACTTATTCTTTTGATGAATTAATGAGTGCTTTGATTGCTTATGAGGAGAGATTAAATAGGTCCAGTGAAAAAGTCGATGAGAAGGCATTTCAAGTGAAAGGTGAGTTTTCTTATAAGGGGAAGACAGAATATTCTGGAGGCCATGGACATGGTAGAGGTGGTTTCCAAGGCCGTGGTTGTGGCAGAGGCAGAGGTCGTGGTCAAAGTGGTGATCAACAAAAATTCAAGAGCCATATTCAGTGCCGCTATTGCGAGAAGTTTGGGCATAAGGAAGCTGATTGTTGGTCTAAACGGAGAAATGAGAAGAAACGAGCAAATTATACAGAAGTTGTTGATGAAGAAAGTAAGCTTTTTATGGCTCATTCTTATGTTCCAAATGTCTCGAATGATGTGTTGTTTATAGATAGTGGGTGCTCCAATCACATGTGTGGTGCGAAGGCTTTATTCAGACATCTTGATGAGTCTAAGCAGAGTGAAGTTCGACTCAGAGATGATAAGAAAATTCATGTCGCAGGAAAGGGTACCATTGCCATCAATACAACTAAGGGTAACGTAAAGCTTCTCTATGATGTTCAATATGTTCCTACCCTTGCTCATAACTTGTTAAGTGTTGGGCAACTCATGAGTTCTGGTTATTTAATTGTGTTTGATGATGATTGTTGTGTTGTAAAACATAAGAAGTCTGGACAGACCATAGCTAATGTTCATGCGACTCAAAACAACATGTTTCCTCTTGAGGTGTCTAGTATTACCAATTGTGCCTTAGTTGCTAAAGGGTCTAGTGAAGCAAAATTATGGCATTTACGCTATGGTCATTTACATGAAAAAGGGTTGAAATTACTAAGCCAAAAAAATATGGTTTTGGGACTACCTAGAATAAGCGCACTTGCTTTTTGTGAAGGTTGTGTTTATGGTAAACAGAGAAGGAAGTCTTTGCCTTTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_12867.p1 GENE.S_Transcript_12867~~S_Transcript_12867.p1 ORF type:complete len:498 (+),score=96.19,UBN2|PF14223.2|3.1e+03,UBN2|PF14223.2|1.3e-36,UBN2_2|PF14227.2|2.7e-14,gag_pre-integrs|PF13976.2|4.1e-12,UBN2_3|PF14244.2|2.5e-09,DUF4219|PF13961.2|9.5e-06 S_Transcript_12867:254-1747(+)
MASNGSNASQPLIPQFKGDKYHSWSLKMKTLLKSQELWDLVENGYDEPDPAPAQPDQQLREARKKDAKALLFIQSAVDDEIFPRISAASTSKEAWDILKQEYLGDKKVITVKLQSLRRDFENLSMNEKESIQSFLSRVSGIVNQRRTYGEIVSDETVVSKVLRSLQKDFNEVVAAIEITQDLSTYSFDELMSALIAYEERLNRSSEKVDEKAFQVKGEFSYKGKTEYSGGHGHGRGGFQGRGCGRGRGRGQSGDQQKFKSHIQCRYCEKFGHKEADCWSKRRNEKKRANYTEVVDEESKLFMAHSYVPNVSNDVLFIDSGCSNHMCGAKALFRHLDESKQSEVRLRDDKKIHVAGKGTIAINTTKGNVKLLYDVQYVPTLAHNLLSVGQLMSSGYLIVFDDDCCVVKHKKSGQTIANVHATQNNMFPLEVSSITNCALVAKGSSEAKLWHLRYGHLHEKGLKLLSQKNMVLGLPRISALAFCEGCVYGKQRRKSLPL*

Click here to download the sequence:
Link to NCBI Protein BLAST