Transcript Information: S_Transcript_129165.p1


Annotated TAIR IDAT5G44230.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:17814336-17816309 | Forward length=657
E-Value4.2E-255
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.007982113732
Replicate 24.8843826279438
Replicate 33.8052030774899
Condition 2: 8 Hour
Replicate 14.9459489590941
Replicate 25.3234218148747
Replicate 36.8056621871326
Condition 3: 24 Hour
Replicate 14.6387478496593
Replicate 25.3587626769376
Replicate 35.393870942058


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_129165.p1 GENE.S_Transcript_129165~~S_Transcript_129165.p1 ORF type:5prime_partial len:664 (+),score=95.50,PPR|PF01535.16|8.1e+03,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|3.9e+03,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.00086,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|8.5e+02,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|0.14,PPR|PF01535.16|1.1,PPR|PF01535.16|8.6e+02,PPR|PF01535.16|5.8e+02,PPR_2|PF13041.2|4.8e-07,PPR_2|PF13041.2|0.00035,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|3.1e-10,PPR_2|PF13041.2|6.4e-09,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|44,PPR_2|PF13041.2|1.3e+02,DYW_deaminase|PF14432.2|4.4e-43,PPR_1|PF12854.3|0.82,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|41,PPR_3|PF13812.2|36,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|7.4e-06,PPR_3|PF13812.2|0.096,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|2.1e+03,TPR_14|PF13428.2|4.5e+02,TPR_14|PF13428.2|8.2e+02,TPR_14|PF13428.2|48,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|67,TPR_14|PF13428.2|40 S_Transcript_129165:1-1992(+)
GGTAATGTAATGCGCAGTCCAGGACCACTTCGTCTCTGCACAAAAACATTACGCCAAATTTGCTTTCAGCAGATTAACTCCCCCTCTAATTCCAATCCTCACCACAAACATCCCCAGTCTTTCTCCTTTCATCCAAACCACCAAGACCAAATATCAGTCATAGAATCCCGTATAACCTCTCTCCTTGATGGCTGCACGAACCTCAACCATCTCAAACGAGTTCATGCCCACATCTACCGTTGTGGTCTCCACCACAACTCCTATCTTCTCACCAAACTCATTCGCATTCTCACTAAACTCAACTCTCCTATGCACACCTACCCTCACCTTGTTTTCTCCCAACTCCGTCACCCGAACTCGTTTACTTGGACCGGTATGATTCGTGGGTATGCCGTTAATGGGCCTGTCTCTGAGTCTATAGCTTTTTACCGTTGTATGAGGAGGGATGGAGTTAGGCCCATGTCTTTCACCTTCTCTGCCTTGTTCATGGCCTGTACTTCTTTGAGGGATATTGGTCTGGGCCAGCAAATGCATGCGCAGTTCTTTAAATTTGGTACGTTTGAGTCAGATTTGTTAGTGGGTAATGCTTTGATTGACACGTACGTGAAATGTGGGGCGGTGGATACCGCACGCGAGGTGTTCGACGAAATGCCTGAGAGAGATGTTATTTCTGCTACTTCCTTGATTGTTGCGTATGCCAAGAGTGGAGATATGAAGGTTGCTAGGGAGTTGTTTGATGAGCTCCTTTTGAAGGATGTGGTGGTCTGGACTGCCATGATCACGAGCTATGCGCAGAATGCTATGCCGAAGGAGGCTTTGGACTTGTTTGAGAGAATGCAATGTGGTGGGCTTAAGGCTGATGAGTTTACTTTGGTTGCCGTTATCTCTGCCTGTGCTCAGCTGGGGACAACCAAGTACGCCGCTTGGATCCGTGATATTGCTGAAGAGTCAGGGCATGGGCCTGTTCGAAATGTTGTTATTGGGTCTGCTTTAATAGATATGTATTCCAAGTGTGGGAGGGTAGACGATGCGTACGAGATTTTCAAGGTTATGATTGAAAGAAATGTGTACACTTATAGTTCCATGATTGCGGGATTCGCAGTGAATGGCCGCTTTGATGAGGCGATGCAATTGTTCTACCAGATGGAGAAGGTGGGTTTAAAGCCAAATGAGGTCACCTTTGTTGGGGTGCTTACAGCTTGTAGTCATGCAGGGATGGTGGAAGAAGGCCGTCGGTTATTTGGGATCATGGAGACGATTTATGGTGTCACGTGTACAGCAGATCATTATGCTTGTATGGCTGATCTTCTTGGAAGATCTGGCCACTTGGAAGAGGCTCTTGACCTTGCCAAATCGATGCCCTTACATCCTCATGGGGGTATTTGGGGAGCTCTGCTTGGAGCTTGTAGCATTCATAACAATCCTGATATAGCTGAGATTGCTGCCGGCCATTTATTTGAACTTGAACCTAATAGCATAGGCAACTATGTCGTGCTGTCAAATATACTGGAATCAGCTGGTAGATGGGATCGTGTTGCAGTAGTGAGAAAACTGATGAGGATGAAAGGTTTGAGAAAGAATCCTGCTTGTAGCTGGTTGGAAGGAAAGAAAGGAAGCATTCATGAATTTTTTGCAGGAGACCTGACCCATCCGAGGTCCAAAGAGATTAAACACGTGTTGGAGGACCTTCTTGATAAGTTGAAGCTTCATGGATACCAGCCAATTCTAGGATCAGTGAGTTATGACGTAAGTGATGATGACAAGAAGCAATTGTTGATGACTCACAGTGAGAAGCTAGCATTAGCATTTGGATTGCTGACAAGTGATTCCAACGACACAATCAGGATTATGAAGAACCTACGAATTTGTGAGGATTGCCATGTTTTCATGTGTGGTGCTTCCAAAATTACAAGGAGGGAGATTGTTGTGAGAGATAGCATGAGATTTCACCATTTTCGTGATGGGTCATGCTCCTGTAGAAACTTCTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_129165.p1 GENE.S_Transcript_129165~~S_Transcript_129165.p1 ORF type:5prime_partial len:664 (+),score=95.50,PPR|PF01535.16|8.1e+03,PPR|PF01535.16|2.1e-05,PPR|PF01535.16|3.9e+03,PPR|PF01535.16|0.0002,PPR|PF01535.16|0.00086,PPR|PF01535.16|1.1e-06,PPR|PF01535.16|8.5e+02,PPR|PF01535.16|1.1e-05,PPR|PF01535.16|4.6e-08,PPR|PF01535.16|0.14,PPR|PF01535.16|1.1,PPR|PF01535.16|8.6e+02,PPR|PF01535.16|5.8e+02,PPR_2|PF13041.2|4.8e-07,PPR_2|PF13041.2|0.00035,PPR_2|PF13041.2|0.06,PPR_2|PF13041.2|3.1e-10,PPR_2|PF13041.2|6.4e-09,PPR_2|PF13041.2|2.6e-12,PPR_2|PF13041.2|44,PPR_2|PF13041.2|1.3e+02,DYW_deaminase|PF14432.2|4.4e-43,PPR_1|PF12854.3|0.82,PPR_1|PF12854.3|3.8e+03,PPR_1|PF12854.3|0.0025,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.0052,PPR_1|PF12854.3|0.00042,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|41,PPR_3|PF13812.2|36,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|0.018,PPR_3|PF13812.2|0.0045,PPR_3|PF13812.2|1.1e+03,PPR_3|PF13812.2|0.027,PPR_3|PF13812.2|7.4e-06,PPR_3|PF13812.2|0.096,PPR_3|PF13812.2|0.36,PPR_3|PF13812.2|2.1e+03,TPR_14|PF13428.2|4.5e+02,TPR_14|PF13428.2|8.2e+02,TPR_14|PF13428.2|48,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|67,TPR_14|PF13428.2|40 S_Transcript_129165:1-1992(+)
GNVMRSPGPLRLCTKTLRQICFQQINSPSNSNPHHKHPQSFSFHPNHQDQISVIESRITSLLDGCTNLNHLKRVHAHIYRCGLHHNSYLLTKLIRILTKLNSPMHTYPHLVFSQLRHPNSFTWTGMIRGYAVNGPVSESIAFYRCMRRDGVRPMSFTFSALFMACTSLRDIGLGQQMHAQFFKFGTFESDLLVGNALIDTYVKCGAVDTAREVFDEMPERDVISATSLIVAYAKSGDMKVARELFDELLLKDVVVWTAMITSYAQNAMPKEALDLFERMQCGGLKADEFTLVAVISACAQLGTTKYAAWIRDIAEESGHGPVRNVVIGSALIDMYSKCGRVDDAYEIFKVMIERNVYTYSSMIAGFAVNGRFDEAMQLFYQMEKVGLKPNEVTFVGVLTACSHAGMVEEGRRLFGIMETIYGVTCTADHYACMADLLGRSGHLEEALDLAKSMPLHPHGGIWGALLGACSIHNNPDIAEIAAGHLFELEPNSIGNYVVLSNILESAGRWDRVAVVRKLMRMKGLRKNPACSWLEGKKGSIHEFFAGDLTHPRSKEIKHVLEDLLDKLKLHGYQPILGSVSYDVSDDDKKQLLMTHSEKLALAFGLLTSDSNDTIRIMKNLRICEDCHVFMCGASKITRREIVVRDSMRFHHFRDGSCSCRNFW*

Click here to download the sequence:
Link to NCBI Protein BLAST