Transcript Information: S_Transcript_129305.p1


Annotated TAIR IDATMG00860.1
Annotated Gene NameDNA/RNA polymerases superfamily protein
Annotated Gene Symbol(s)ORF158
Annotation TypeHomolog
Chromosome PositionchrM:235916-236392 | Forward length=158
E-Value4E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.48493078052443
Replicate 20.73971451869219
Replicate 30.7124380557076
Condition 2: 8 Hour
Replicate 10.65281807093264
Replicate 20.79899459427595
Replicate 30.77681660368008
Condition 3: 24 Hour
Replicate 10.76425248363595
Replicate 20.79290302891011
Replicate 30.53311901439385


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_129305.p1 GENE.S_Transcript_129305~~S_Transcript_129305.p1 ORF type:complete len:1372 (+),score=270.11,RVT_1|PF00078.23|2.3e-28,RVT_1|PF00078.23|3.3e+03,Chromo|PF00385.20|5.9e-10,Retrotrans_gag|PF03732.13|3.9e-08,Retrotrans_gag|PF03732.13|3.2e+02,Retrotrans_gag|PF03732.13|1.6e+04,gag-asp_proteas|PF13975.2|4.2e-09,rve|PF00665.22|1.8e-08 S_Transcript_129305:1417-5532(+)
ATGTGTGGTAGAGCTGCTTTATGGTTCAATAGTTATATTATGACAAGGCCTAATCTCTTGTGGGAGGAATTTGTTGGGGATGTACTGGTCAGATTTAAGTCTGATAGGGAGGATACTTTAGTGGAAAGATTCAATAGATTGCAGCAAATAGGATCATTGGAGGAGTATGTAGATGAGTTTGAAGGCTTGAAGGCACAGATGTTACATAAGAATCCATTGCTTCCTGCAAATTTCTTTTTGGACAGTTTTATTGCTGGATTAACACCAACTGTTAAACCTTTTGTCAAAGCCTTTTTCCCTGCTACCATTACTGCTGCTATTCAATATGCTAGGTTGCAAGAAGAAACTGTCACTGCTGTAACCACTAAACCACCACAAAAGAACTATACTAACACCACAAATAGCCAACCCAGAACCTTCAATACCTATTCCTCACAGAACTCAAACATATCCCAACCCTCTTTTACTCCTAAACCACCACTTTTACCAAACCCAAATCATCTAAACAATCCTAATACATCTTTTAAGCCAAGATACATTTTAGCTGCTGAGAGAAATGAAAAAAGATCTAAGGGTCTTTGTTATTACTGTGATCAGCCTTTTGAAAAGGGACATAAGTGTGCCAATAAGAAGACTCAGTTATTCTTGGTAGAAGTACCTGGGTTAGAAGATGAGCCTGGAAAGGAAGAAGGGGAGATGGATTTTGATTTAACAGAAGAGTATGAAACACCTATATCTGAACCTGTGATTTCTGTTAATGCATTGAATGGATGCCAGGGAAATAAGACCATGAGAGTAACTGTATATGTGGGACAAAAAGCTTTACATTCCCTCATTGACTCGGGGAGTACTCATAATTTCCTGGATGTCAACTTAGCTCATAAACTGAATTGTAAAATTGTCCAAATACCACCTCAGCCAGTAACTGTGGCAGATGGGGCTCAATTGCCTTGTCAGTTTATGATTAAGAATTTTACATGGAGGTTGCAGAAGACTTTCTTCACATCTGATGTGTTGCTATTACCTTTGGGAAGCTGTGATATGGTACTTGGTACTCAGTGGTTAAGTACTTTGGGAGATATAAGCTGGAGCTTTGAGAATTTGACAATGAAATTTTGTTTCCAAGGAAGGCCTTATGTGTTAAGGGGGCTACAATCTAAACCCACACAAGTTGTTTCTGGTTCACCTAAGGACTTGAATGATGCTGCACATTTGTGTTTGCTCCAACTGATGCCTGCCAGTAATTCCCTAGAAATACCAATGAACAACTTTGAGACTTTTTGTCGTTCACTGGAACTGGAACAACCTCCTCCTCAGGTTCAGAACCTCTTGTCTCAGTTTCAATCCATCTTTGAGGAACCAAAGACATTGCCTCCTAGTAGGGGTACCTTTGACCACAAAATTCCTTTGATGGCTGGAGCTGACCCAGTCAGTGTTAGACCATACAGATATCCTATTAAACAAAGGGATATAATTGAAGAACAGGTGCAAGATATGCTGGACAGGGGGATCATTCAACACAGCTCCAGTCCCTTTGCTTCTCCAGTGGTTCTGGTAGGGAAAAAGGATGGAACCTGGAGACTTTGCATAGACTACAGGGCCCTCAACAACCTTACCATCAAAGACAAGTTTCCCATTCCAGTAGTGGAGGAGCTGATTGATAAATTAGCAGGATCTTCCATCTTCAGCAAAATTGATCTCAGATCAGGATACCACCAGATCAGAATGCACTCTCAGGACATCTACAAAACAGCATTTAAAACACATTATGGTCACTTTGAATTTTTGGTAATGCCTTTTGGACTCACTAATGCTCCTGCTACATTTCAGAGCTATATGAATTTTGTTTTTAAACCATTTCTTAGAAAATTTGTGTTAGTGTTCTTTGATGATATTTTGGTGTATAGTCCTAACATTGACAGCCATCTAGAGCATTTAAAACAAGTTTTCCAGATTATGCAACAACATCATCTCTATGCCAAACAAAGTAAATGTATCTTTGGAGGAGACAAAGTGGAATACTTGGGGCATTACATATCCAGAGAAGGAGTCCAAACTGATCCCAAGAAAGTGGAGGCTGTGAGGGGTTGGCCTGTACCTTCTACAGTTAAACAACTAAGGAGTTTCTTGGGTATGACTGGTTACTATAGGAGATTCATCAGACATTATGCTCATATTACTCAACCCCTTACTCAACTACTTAAAAAGGGGGAGTTTCTATGGTCTGCACATGCACAAGAAGCTTCTGATAAGTTGAAGGAGGCCCTTACAACTGCTCCTGTACTTGCTTTACCAGACTTTTCTAAAGTCTTTGTGGTGGAGACTGATGCTTCTCAGGGGGGTATTGGGGCTGTACTTATGCAAGATAATCATCCCTTGGCTTTTATCAGCAGAGCATTGGGCCCTAAATGGGTGAATTTGTCTGTTTATGAAAAAGAGCTCTTAGCTCTAGTGTTTGCTGTCCAAAAATGGGAGCAGTACCTAAGTGGAACTCATTTCATCATCAAAACTGATCAGCAAAGTTTAAAGTGGTTGCTTCAACAAAGGGTTTCTACCCCTTTTCAACAATTTTGGCTGTCCAAACTTATGGGGTTCTCTTATGAAATCCAGTATAAGAAGGGTAAGGATAACTTGGTGGCTGATGCTTTATCCAGGGTTTCAAATGCTGAACTACTTTGTATGGCTGTTTCTTCAATTCAATCTGATCTCATGGATCAAATTAATGCCAGTTGGTTGAATGATATTAATTTGCAACATGTCATTCAGCAGCTACAGCAAGGTGTACCCCAAGCTCATTTCTCTCTGGTTAATGGTGTTTTGAGGAGGAAAGGGAAAATTGTAGTAGGGTCTGACATGGAGTTGAGGAACAAGCTCTTGGGCTGGGCTCATGATTCTGCAATGGGAGGGCATTCAGGCAGGGATGCTACTCTCCAAAGACTTAAGGGTCTTTTCTATTGGAAGGGTCTTACCAAATTTGTTGCTCACTATATCAGAAATTGTGTTACTTGCCAAGCCAATAAGGCTGAGAATTCTCCTTATCCTGGTTTGTTGCAACCATTACCAATCCCACAGGATGTTTGGGCAGATATCTCCATGGATTTTATTGAAGGTTTACCAAAATCCAATGGTAAAGAGGTTATCTTTGTGGTGGTGGATAGACTCAACAAGTATGGTCATTTCTTGGCTCTTAAACATCCCTATACAGCAGCAGATGTAGCACAAATATATCTGGACCATATTTTTAAACTTCATGGTTGGCCAAGGAGTATTGTGAGTGATCGCGATCCTGTTTTTCTGAGTCAATTTTGGAAGTCTTTGTTTGCTGTCCAAGGAGTAGACTTGTTACTTTCTTCTGCCTATCACCCTCAAACTGATGGCCAAACAGAAGTTCTGAATAAATGCTTAGAGTGCTACCTTAGATGCATGTGTGGTACTGATCCCACTACTTGGAGTTCATGGTTGCCCCTTGCTGAATGGTGGTATAACACCACTTACCACTCAGCCACTCACTTGACCCCGTATGAAGTTGTCTACAACCAACCTCCACCTATTCATTTGCCCTATGTCCCTGGGGAATCAAACATAGAACCTGTGGACAGGTCTCTCCAAGGGAGGGAGGCAATGATACAAGCATTAAAGCAACACCTTCAACAAGCGGATCAAAACAGGTCAGAAAGAGAATTCGAAGTGGGAGAATGGGTATGGCTCAAATTGCAAGCTTATAGACAATTAACACTACGAAGGAGGTTTAATCAGAAGCTCAGTTCAAAGTACAGTGGACCTTTTCAGGTTATTGAGAAAATTGGGAAGGTTGCGTACAAACTCAGATTGCCTAGTTCAGTCCAAATACACAATGTGTTCCATGTATCTCTCCTCAAGGCATTCAAGGGAAATTTGCCTGCTGCTCCTCACATACCAGAATGGCTGCAAGGAAATCCGACTGATCATACACTGGTTCCCAGAGCAATCTTAGACAGGGGAATTGTCAAGCATCAAAATGCAGCTAAGGTCCAATATTTGATTCAGTGGCAGGGACAGACCCCAGATAAGGCCACTTGGGAGTTGGCTGAAGACTTGGAGCAGAGGTTTCCTTCATTCTTTACACAGGAGACTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_129305.p1 GENE.S_Transcript_129305~~S_Transcript_129305.p1 ORF type:complete len:1372 (+),score=270.11,RVT_1|PF00078.23|2.3e-28,RVT_1|PF00078.23|3.3e+03,Chromo|PF00385.20|5.9e-10,Retrotrans_gag|PF03732.13|3.9e-08,Retrotrans_gag|PF03732.13|3.2e+02,Retrotrans_gag|PF03732.13|1.6e+04,gag-asp_proteas|PF13975.2|4.2e-09,rve|PF00665.22|1.8e-08 S_Transcript_129305:1417-5532(+)
MCGRAALWFNSYIMTRPNLLWEEFVGDVLVRFKSDREDTLVERFNRLQQIGSLEEYVDEFEGLKAQMLHKNPLLPANFFLDSFIAGLTPTVKPFVKAFFPATITAAIQYARLQEETVTAVTTKPPQKNYTNTTNSQPRTFNTYSSQNSNISQPSFTPKPPLLPNPNHLNNPNTSFKPRYILAAERNEKRSKGLCYYCDQPFEKGHKCANKKTQLFLVEVPGLEDEPGKEEGEMDFDLTEEYETPISEPVISVNALNGCQGNKTMRVTVYVGQKALHSLIDSGSTHNFLDVNLAHKLNCKIVQIPPQPVTVADGAQLPCQFMIKNFTWRLQKTFFTSDVLLLPLGSCDMVLGTQWLSTLGDISWSFENLTMKFCFQGRPYVLRGLQSKPTQVVSGSPKDLNDAAHLCLLQLMPASNSLEIPMNNFETFCRSLELEQPPPQVQNLLSQFQSIFEEPKTLPPSRGTFDHKIPLMAGADPVSVRPYRYPIKQRDIIEEQVQDMLDRGIIQHSSSPFASPVVLVGKKDGTWRLCIDYRALNNLTIKDKFPIPVVEELIDKLAGSSIFSKIDLRSGYHQIRMHSQDIYKTAFKTHYGHFEFLVMPFGLTNAPATFQSYMNFVFKPFLRKFVLVFFDDILVYSPNIDSHLEHLKQVFQIMQQHHLYAKQSKCIFGGDKVEYLGHYISREGVQTDPKKVEAVRGWPVPSTVKQLRSFLGMTGYYRRFIRHYAHITQPLTQLLKKGEFLWSAHAQEASDKLKEALTTAPVLALPDFSKVFVVETDASQGGIGAVLMQDNHPLAFISRALGPKWVNLSVYEKELLALVFAVQKWEQYLSGTHFIIKTDQQSLKWLLQQRVSTPFQQFWLSKLMGFSYEIQYKKGKDNLVADALSRVSNAELLCMAVSSIQSDLMDQINASWLNDINLQHVIQQLQQGVPQAHFSLVNGVLRRKGKIVVGSDMELRNKLLGWAHDSAMGGHSGRDATLQRLKGLFYWKGLTKFVAHYIRNCVTCQANKAENSPYPGLLQPLPIPQDVWADISMDFIEGLPKSNGKEVIFVVVDRLNKYGHFLALKHPYTAADVAQIYLDHIFKLHGWPRSIVSDRDPVFLSQFWKSLFAVQGVDLLLSSAYHPQTDGQTEVLNKCLECYLRCMCGTDPTTWSSWLPLAEWWYNTTYHSATHLTPYEVVYNQPPPIHLPYVPGESNIEPVDRSLQGREAMIQALKQHLQQADQNRSEREFEVGEWVWLKLQAYRQLTLRRRFNQKLSSKYSGPFQVIEKIGKVAYKLRLPSSVQIHNVFHVSLLKAFKGNLPAAPHIPEWLQGNPTDHTLVPRAILDRGIVKHQNAAKVQYLIQWQGQTPDKATWELAEDLEQRFPSFFTQET*

Click here to download the sequence:
Link to NCBI Protein BLAST