Transcript Information: S_Transcript_130015.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.68238464705591
Replicate 21.4546894213746
Replicate 31.1484487671107
Condition 2: 8 Hour
Replicate 11.093609759853
Replicate 21.4750669432787
Replicate 32.1862407799981
Condition 3: 24 Hour
Replicate 11.7603935413666
Replicate 21.6603524964357
Replicate 31.201049733577


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_130015.p1 GENE.S_Transcript_130015~~S_Transcript_130015.p1 ORF type:5prime_partial len:273 (+),score=56.13,UBN2_3|PF14244.2|2e-08 S_Transcript_130015:2-820(+)
GAGAGTGTTATATATTCTGATTCTGCTCAGATGATTCGGGAGGAACTGAATGATAGATATGGTCAGGCCACAGGACCAAAATTATATCAGTTGCAAAAGGATATTTGCTCTATGGCACAAGAGAGTACAAATATTGCTACATACTTTACTAAGTTCAAAGCTCTCTGTGATGAGTTTCACACCCTCAGTCCAGTCACAAATTGCACATGTGGAGCGGCTCAAGCTCTTCTCAAGTTTCAACAAGATCAGAAGGTAGTTCAATTTCTCATGGGACTAAATGGTGATTATAACACTACACGAGGCAACATCTTGATGATGAAGCCCTTACCTAATCTGGCTTCAGCATATGGCCTATTGATTGCTGATGAACAACAAAAGCAGATGCAAGCACCTTCTCATTTTGCTGACAACTCTGCCTCCATGCTTGCTTCTGTTCCTAAAGGCCTTTCTCACAGTAATTTCCGACCTCAATTTTCTCCTAGACCTTCTTTACAACAATCTAATTCAAGGAAGAATATCATTTGCAATCATTACAAGAAATCTGGTCATCCTGCCAGCAAATGCTACAGACTTATTGGATTTCCTAAAGATTTCAAGTTTACTAAACCTAGACCTTTTGCTGCTACTGTCTATGGCGACAATAATGTCTTCACTGGAGATTCTTCTGGTTCTTCTCAACCTGGAAATGCTAGTTCCATTTCTGATCAAGCTCATACTCTTACAACTGATCAATACAATCAGTTTCTGTCTCTCATCAATTCCGTCAATCTCAAGGGTGTTACTACTCCCATGGCTCATTTCTGCTGTTGTGCATTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_130015.p1 GENE.S_Transcript_130015~~S_Transcript_130015.p1 ORF type:5prime_partial len:273 (+),score=56.13,UBN2_3|PF14244.2|2e-08 S_Transcript_130015:2-820(+)
ESVIYSDSAQMIREELNDRYGQATGPKLYQLQKDICSMAQESTNIATYFTKFKALCDEFHTLSPVTNCTCGAAQALLKFQQDQKVVQFLMGLNGDYNTTRGNILMMKPLPNLASAYGLLIADEQQKQMQAPSHFADNSASMLASVPKGLSHSNFRPQFSPRPSLQQSNSRKNIICNHYKKSGHPASKCYRLIGFPKDFKFTKPRPFAATVYGDNNVFTGDSSGSSQPGNASSISDQAHTLTTDQYNQFLSLINSVNLKGVTTPMAHFCCCAF*

Click here to download the sequence:
Link to NCBI Protein BLAST