Transcript Information: S_Transcript_130059.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value1E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0768266395738
Replicate 21.0202446038157
Replicate 30.63963246532719
Condition 2: 8 Hour
Replicate 12.5886311945653
Replicate 23.362243148167
Replicate 30.73927795161785
Condition 3: 24 Hour
Replicate 11.262710028358
Replicate 21.1790422207348
Replicate 30.87475298514853


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_130059.p1 GENE.S_Transcript_130059~~S_Transcript_130059.p1 ORF type:3prime_partial len:173 (+),score=10.80 S_Transcript_130059:64-579(+)
ATGGAGTCAAATGCACTATCATTTATAAGGAGGAGGAACAAGAAACAAATAGAGGTGTTCCTTATCCTAGTTGCGCTTCTTAATATAGCGATGATGTTGTACTTGGTAGTTCGGGCTTTAAGAATCACTTTTAATAAAATAAATCAACTAGAGTATCGAAAAAAAGATAAAAAACAACATAGGCTAGCAAATCTAACTATGTTGATTAGGGAAAGTGATGTTACATGTCGGAATGAACTCCGAATGAATAGGCAAACCTTTGGTATACTATGTGAAATGGCAAGAGATGTTGGAGGGTTGAGTGCAACTAGAAATATGTCCATAGAAGAAATTGTTGCCATGTTCTTGTATACTTTAGCACATCATAAGAAAAATAGATCCGTAGCAAATTATTTTCTTAGGAGTGGAGAAAGTGTAAGTAGGCAATTCAATCGATGCCTTCTTGCCGTTTTGAAGTTGCATCGCCACTTGCTCAAGAAACCCACACCTATATCCGAAGAATGTGAAGATGATAGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_130059.p1 GENE.S_Transcript_130059~~S_Transcript_130059.p1 ORF type:3prime_partial len:173 (+),score=10.80 S_Transcript_130059:64-579(+)
MESNALSFIRRRNKKQIEVFLILVALLNIAMMLYLVVRALRITFNKINQLEYRKKDKKQHRLANLTMLIRESDVTCRNELRMNRQTFGILCEMARDVGGLSATRNMSIEEIVAMFLYTLAHHKKNRSVANYFLRSGESVSRQFNRCLLAVLKLHRHLLKKPTPISEECEDDR

Click here to download the sequence:
Link to NCBI Protein BLAST