Transcript Information: S_Transcript_130060.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.7676827279379
Replicate 20.2121422072838
Replicate 30.53200200241156
Condition 2: 8 Hour
Replicate 10.92273323487595
Replicate 21.8284683984392
Replicate 32.3570408409354
Condition 3: 24 Hour
Replicate 10.63014086992099
Replicate 20.76272442805015
Replicate 30.84881880209525


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_130060.p1 GENE.S_Transcript_130060~~S_Transcript_130060.p1 ORF type:internal len:208 (+),score=22.93,DDE_Tnp_4|PF13359.2|3.5e+03,DDE_Tnp_4|PF13359.2|3.2e-11 S_Transcript_130060:1-621(+)
ATAAATCAACTAGAGTATCGAAAAAAAGATAAAAAACAACATAGGCTAGCAAATCTAACTATGTTGATTAGGGAAAGTGATGTTACATGTCGGAATGAACTCCGAATGAATAGGCAAACCTTTGGTATACTATGTGAAATGGCAAGAGATGTTGGAGGGTTGAGTGCAACTAGAAATATGTCCATAGAAGAAATTGTTGCCATGTTCTTGTATACTTTAGCACATCATAAGAAAAATAGATCCGTAGCAAATTATTTTCTTAGGAGTGGAGAAAGTGTAAGTAGGCAATTCAATCGATGCCTTCTTGCCGTTTTGAAGTTGCATCGCCACTTGCTCAAGAAACCCACACCTATATCCGAAGAATGTGAAGATGATAGGTGGAAATGTTTCAAGAATTGTTTAGGAGCTTTAGATGGCACCTACATTAATGTCCACATTGCAAGTGAGGATAGACCAAGGTATCGAAAAAGAAAAGGCTCTCTTGCTATGAATGTGTTAGGTGTTTGTACACCTAATATGGAATTCATTTTTGTTTCACCGGGTTGGGAAGGTTCCGCACATGATGGTCGTGTCCTTCGAGATGCCCTGTCTAAACCTAATGGGTTGAAGGTGCCTCAAGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_130060.p1 GENE.S_Transcript_130060~~S_Transcript_130060.p1 ORF type:internal len:208 (+),score=22.93,DDE_Tnp_4|PF13359.2|3.5e+03,DDE_Tnp_4|PF13359.2|3.2e-11 S_Transcript_130060:1-621(+)
INQLEYRKKDKKQHRLANLTMLIRESDVTCRNELRMNRQTFGILCEMARDVGGLSATRNMSIEEIVAMFLYTLAHHKKNRSVANYFLRSGESVSRQFNRCLLAVLKLHRHLLKKPTPISEECEDDRWKCFKNCLGALDGTYINVHIASEDRPRYRKRKGSLAMNVLGVCTPNMEFIFVSPGWEGSAHDGRVLRDALSKPNGLKVPQG

Click here to download the sequence:
Link to NCBI Protein BLAST