Transcript Information: S_Transcript_130094.p1


Annotated TAIR IDAT4G02460.1
Annotated Gene NameDNA mismatch repair protein, putative
Annotated Gene Symbol(s)PMS1
Annotation TypeOrtholog
Chromosome Positionchr4:1076306-1080510 | Reverse length=923
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6644292487467
Replicate 24.2702173337125
Replicate 34.541275874349
Condition 2: 8 Hour
Replicate 13.7835369917494
Replicate 24.0413662058861
Replicate 34.6528140471088
Condition 3: 24 Hour
Replicate 15.1910959692702
Replicate 24.5327623152695
Replicate 34.8274450581835


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_130094.p1 GENE.S_Transcript_130094~~S_Transcript_130094.p1 ORF type:5prime_partial len:930 (+),score=193.11,MutL_C|PF08676.7|3.2e+03,MutL_C|PF08676.7|2.5e-35,DNA_mis_repair|PF01119.15|2.1e+03,DNA_mis_repair|PF01119.15|1.7e-23,HATPase_c_3|PF13589.2|2.5e-14,HATPase_c|PF02518.22|5.4e-09 S_Transcript_130094:3-2792(+)
TTTCCATTGTCTCAAACTTCCAGAAATGCCCTTCACATCCTTCTTCTTCTTCTCCTTCTGATTTTAATGGCTTCCACACCAACAATCAAGCCCATAAACAAGGGGGTAGTCCACAAAATATGTGCAGGGCAAGTCATTTTGGACCTTTCATCTGCCATCAAAGAGCTCGTCGAAAACAGCTTAGACGCTGGAGCCACTTCCATTGAGATTGCTCTCAACAATTACGGGGAAGATTGGTTCCAAGTCATCGATAATGGCTCCGGTATTTCTCCTTCCAATTTCAAGGTTCTTGCCCTTAAGCATCATACTTCCAAATTGGCAGATTTCCCTGACCTGCAGTCCCTTACCACATTTGGCTTCAGAGGAGAGGCACTTAGCTCCCTTTGTGCACTGGGGAATTTGACTGTGGAAACTAGGATGAAGAATGAGTCTGTTGGCACACACTTAACTTTTGACCATTCGGGTCTTTTAGTAGCTGAGAAGAAGACAGCGAGAAAAGTCGGCACCACTGTAACAGTCAAGAAACTGTTCTCGAACTTGCCAGTGCGGAGCAAAGAATTCAGTCGTAATATCCGCAAGGAATATGGGAGACTTATTTCCTTATTAAATGCCTATGCTCTCATTACTAAAGGAGTTCGATTAGTGTGCACCAATATGTCTGGGAAAAATCCAAGATCTGTGGTTCTAAAAACGCAAGGAAGTGGATCACTTAAAGATAACATCATAGCTCTATTTGGGATGAACACTTTTACTTGCTTGGAGCCTCTGAGTATCTCTATGTCAGAAAACTGCCAAGTTGAGGGTTTTGTCTCGAAGTCTGGTCATGGAAGTGGGCGAAATTTGGGTGATAGACAATTCTTTTATGTAAATGGTCGTCCAGTTGATATGCCAAAAGCTGGCAAACTTGTGAATGAATTATACAGAGGCGCAAATTCACGCCAATATCCCATTGCAATCCTGAACTTTATTGTTCCATGTATGGCATATGATGTCAATGTGACGCCTGATAAAAGAAAGATATTTTTCTCAAATGAAGGCTCTATTCTGCAATCTTTAAGAGAAGCTCTAGGAATGATCTACTCAGCGGATTATGTCAGTTATAGTGTTGAAAATCTAGAGGGACCTGGAAACGAAGATGATAGCTCCTCTTCACTGCCTGTGCAATCACAGTCGTTGTCTGAACAGCTGTCTCCCAAAAGAACTCAACTTAGCAGATTATGTGATGAGAAACCGGCTACAGAGGATATAATGATTATAGATTCAACAGAAACAGACAGCCATAATTCATCTTCCTTGGAAGTTTTCCAGAACAATTCTGAGAAGTCACTCATCAAGGATTTCAGGCTCAAGGTTCACAGTATTAAGACTAACTATAGTTTTTCAGGTAGCCATGAGAATAAATTGACAAGTAGCATTGATAATGAGGAACAAAACCTCACAGAAGCGGAAAAGGACACTGCAGTTAATAAGCCTAACAAGTTTGGTCCTGTTCAGTCATCACTTGCCAAGTTCGTCACTGTGCAAAAGCGGAAGCTTGAAAGTATATCAAAACTCTTATCTGAAGTTCCTGTCTTGAGAAATGAGTCTGCTCATTGTAATCCAGTAAACCGTGATTCTGAATTGCATGTTGCTGCTTCAAGCTCAGCCCCTAAGCTCCAGTGTGCTTATGACTCTGCGGGATTTCCTGAGAACGAACCATCAAAGCATTTGAAAACTGATGAAGTTTATGGTCAAGCAAGTACTCCTGTACTAAATGATAATGATACTTGTGTGGAAGTGTCAGGACAGGATATGGAACTTCAAGAGATTAGAATGCCTCTTGAAGAGGTGGCGGTTCCAAGTAGTGCATGTAGAGGAGATATAGGAAATAAACTAGAAGATTCCTCATTTGAAACTCCTCCATTAACAGATACTCCATTGCCACCTTCTAATCTGAAGACATCTTATACCTTGCAATTTAATATGAAAGACCTCATGAAAAAGAGGCAGCAGAAGTTGATATTCCAGTCATGTTCTAATGGTGAAAGAACAACAACCAAAAGGTCATATGCTGCTGCAACACTTGAGTTATCTCAAGCAGACAATGAAGACTGGAAGGCCAGGGCTCTAGCTGCTGCAACCACTGAACTGGAAAGGCTTTTCAGGAAAAAAGATTTCAGCAGGATGAAGGTGATTGGACAATTCAATCTTGGTTTTATAATTGGGAAGTTAGACCAAGACTTGTTTATTATAGATCAGCATGCAGCTGATGAGAAGTACAATTTTGAGCGCCTCTCACAATCAACTATCTTGAACCAGCAGCCATTACTTTGGCCGATCAAGCTAGAATTGTCGCCAGAGGAGGAAGTAATTGCCTCGATGCATATGGATATTATCAGGAAAAATGGTTTTGCCTTGGAAGATGATGCACATGCTCCTTGTGGCCACCGTTTTAAGTTGAAAGCTGTGCCGTTCAGTAAAAACATAACATTTGGAGTTGAAGATGTGAAAGAGCTTATTTCCACTCTTTTGGATGATCAAGGAGATTGCTCAATTATGGGTACTTACAAGATGGATACCACTGCTTCAATATGTCCATCTAGAGTGCGTGCAATGTTAGCATCACGTGCCTGCAGATCTTCTGTCATGGTTGGAGATGCCCTTGGAAGAAATGAAATGCAGAAGATATTTGAGCACTTGGCTGAGCTGGATTCTCCATGGAACTGTCCGCATGGAAGACCAACTATGCGTCACTTGGTTGATTTGTCCATAATCCGTGAAAAGGCAACTCCAAACGAAAATATTCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_130094.p1 GENE.S_Transcript_130094~~S_Transcript_130094.p1 ORF type:5prime_partial len:930 (+),score=193.11,MutL_C|PF08676.7|3.2e+03,MutL_C|PF08676.7|2.5e-35,DNA_mis_repair|PF01119.15|2.1e+03,DNA_mis_repair|PF01119.15|1.7e-23,HATPase_c_3|PF13589.2|2.5e-14,HATPase_c|PF02518.22|5.4e-09 S_Transcript_130094:3-2792(+)
FPLSQTSRNALHILLLLLLLILMASTPTIKPINKGVVHKICAGQVILDLSSAIKELVENSLDAGATSIEIALNNYGEDWFQVIDNGSGISPSNFKVLALKHHTSKLADFPDLQSLTTFGFRGEALSSLCALGNLTVETRMKNESVGTHLTFDHSGLLVAEKKTARKVGTTVTVKKLFSNLPVRSKEFSRNIRKEYGRLISLLNAYALITKGVRLVCTNMSGKNPRSVVLKTQGSGSLKDNIIALFGMNTFTCLEPLSISMSENCQVEGFVSKSGHGSGRNLGDRQFFYVNGRPVDMPKAGKLVNELYRGANSRQYPIAILNFIVPCMAYDVNVTPDKRKIFFSNEGSILQSLREALGMIYSADYVSYSVENLEGPGNEDDSSSSLPVQSQSLSEQLSPKRTQLSRLCDEKPATEDIMIIDSTETDSHNSSSLEVFQNNSEKSLIKDFRLKVHSIKTNYSFSGSHENKLTSSIDNEEQNLTEAEKDTAVNKPNKFGPVQSSLAKFVTVQKRKLESISKLLSEVPVLRNESAHCNPVNRDSELHVAASSSAPKLQCAYDSAGFPENEPSKHLKTDEVYGQASTPVLNDNDTCVEVSGQDMELQEIRMPLEEVAVPSSACRGDIGNKLEDSSFETPPLTDTPLPPSNLKTSYTLQFNMKDLMKKRQQKLIFQSCSNGERTTTKRSYAAATLELSQADNEDWKARALAAATTELERLFRKKDFSRMKVIGQFNLGFIIGKLDQDLFIIDQHAADEKYNFERLSQSTILNQQPLLWPIKLELSPEEEVIASMHMDIIRKNGFALEDDAHAPCGHRFKLKAVPFSKNITFGVEDVKELISTLLDDQGDCSIMGTYKMDTTASICPSRVRAMLASRACRSSVMVGDALGRNEMQKIFEHLAELDSPWNCPHGRPTMRHLVDLSIIREKATPNENIL*

Click here to download the sequence:
Link to NCBI Protein BLAST