Transcript Information: S_Transcript_13012.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0678056051153
Replicate 20.61285526548652
Replicate 30.34153214969631
Condition 2: 8 Hour
Replicate 10.19745731775123
Replicate 20.69048915554712
Replicate 30.46052757171256
Condition 3: 24 Hour
Replicate 10.67422479909241
Replicate 20.76945039302414
Replicate 30.46707489639104


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13012.p1 GENE.S_Transcript_13012~~S_Transcript_13012.p1 ORF type:complete len:324 (-),score=36.99,UBN2_3|PF14244.2|2.4e-42,Retrotrans_gag|PF03732.13|3.7e-07 S_Transcript_13012:36-1007(-)
ATGGCAGGAGGAGATAAAATTATCATTAAACCAGAATATTACTTGAGCTCATCTGATGGGCCAGGAAATATTATTTCTCATTATACTCTTACCGGGGAAAACTATGGGAGATGGGTTAAACACATCTCAAATTCTCTTCGTTCAAAAGATAAATTCTGTTTTGTTGATGGAACCCTTCCCAAACCCGATGTGAAATCTCCAGATGTAAATGCCTGGACAAAATGTAACTCTATGGTGATTGCTTGGATCAATAATACCATTTCGATTGAACTCCAGGGAAGTATTTCTTTTGCGGAGACGGCACGAGACCTTTGGCTTGATCTTGAAGAACGTTTTTCACAAGGTAAAGCACCTCGTATCTATCAATTGAAGAGCGACATTACTCAAATGTCGCAAGACGGAAAATCTGTCCTTGGTTATTTTTCCAATCTGAAGACACTATGGGATGAATTGGGTGATTTAGATCCTTTACCTGAGTGTACTTGCAAGGCCAAAGCTGAATATCAACGACGTCATGAAGAGGAGCGAGTATATCAATTTCTTATGGGACTTGACGCTGAGATATTTGATTCGGTAAGATCTCAAATTCTTAATGCTGAAAATTTACTCAATGTGAGTAAGGCTTATGCTGCAGTTATTAGAGCGGAAAAACAACGTGGACTCGTCCAAAATCGGCACATAAATCCCAACAATGCAGCATTGGAATCCATTGGAGTGGCTGCTGCAGTGAAAGGGAGTTACAGACCTCGTTGTACTCACTGTAACAAGTTGGGACATGAGAAGAAGCAATGTTATGAACTTATTGGCTACCCTCCAAACTGGGACAACAGGCGTGCTTCTAACCGCAACAACAACAGTAGAGAGAGGTGTTGTGTTTTATCTTTTAACATAAATATTACCGCAAGTGCACGGCGTAGATGTAGTCTAGTACTGGAAAGTACGGGTCGTATCCACAGGGAGGTAATGAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13012.p1 GENE.S_Transcript_13012~~S_Transcript_13012.p1 ORF type:complete len:324 (-),score=36.99,UBN2_3|PF14244.2|2.4e-42,Retrotrans_gag|PF03732.13|3.7e-07 S_Transcript_13012:36-1007(-)
MAGGDKIIIKPEYYLSSSDGPGNIISHYTLTGENYGRWVKHISNSLRSKDKFCFVDGTLPKPDVKSPDVNAWTKCNSMVIAWINNTISIELQGSISFAETARDLWLDLEERFSQGKAPRIYQLKSDITQMSQDGKSVLGYFSNLKTLWDELGDLDPLPECTCKAKAEYQRRHEEERVYQFLMGLDAEIFDSVRSQILNAENLLNVSKAYAAVIRAEKQRGLVQNRHINPNNAALESIGVAAAVKGSYRPRCTHCNKLGHEKKQCYELIGYPPNWDNRRASNRNNNSRERCCVLSFNINITASARRRCSLVLESTGRIHREVMN*

Click here to download the sequence:
Link to NCBI Protein BLAST