Transcript Information: S_Transcript_130385.p2


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeHomolog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value8E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.7719384138138
Replicate 25.0763940574813
Replicate 311.098283660928
Condition 2: 8 Hour
Replicate 15.4728877805032
Replicate 29.305105186435
Replicate 35.4704387658802
Condition 3: 24 Hour
Replicate 17.3460670145361
Replicate 210.429364619204
Replicate 35.8033022525046


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_130385.p2 GENE.S_Transcript_130385~~S_Transcript_130385.p2 ORF type:complete len:113 (+),score=10.59,Syntaxin_2|PF14523.2|2.1e-16 S_Transcript_130385:224-562(+)
ATGAGTTTCCAAGATCTGCGTAATGGCGGAAGGCCAGCAACAAGGTCAGCAGCAGCACCTCAAACGCCCTCACAGGCCGTCGCCGCCGGAATTTTCCAGATCAACACCGCCGTCGGCAGTTTCCGCCGCCTTGTCGATTCCATCGGCACCGCCAAAGACACCCCCGACCACCGCCGAAAATTGCACAATACAAGGCAGCGTATAGTGGCGCTGGTCAAGGAGACTGGGGCGAAACTCAAAAGCCTCACTGATTCTGATATTGCTCATGCTGCTGATGTTTCTGTATGGAGTATTTTCTTTCTCTCTTTTTCATTCCTTTTTCTTTTTATTATTATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_130385.p2 GENE.S_Transcript_130385~~S_Transcript_130385.p2 ORF type:complete len:113 (+),score=10.59,Syntaxin_2|PF14523.2|2.1e-16 S_Transcript_130385:224-562(+)
MSFQDLRNGGRPATRSAAAPQTPSQAVAAGIFQINTAVGSFRRLVDSIGTAKDTPDHRRKLHNTRQRIVALVKETGAKLKSLTDSDIAHAADVSVWSIFFLSFSFLFLFIIM*

Click here to download the sequence:
Link to NCBI Protein BLAST