Transcript Information: S_Transcript_13085.p1


Annotated TAIR IDAT1G28690.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:10080042-10081604 | Reverse length=520
E-Value9.2E-202
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.526196977797
Replicate 25.8271484259374
Replicate 36.8194452185263
Condition 2: 8 Hour
Replicate 17.5357481266372
Replicate 27.9462850359685
Replicate 37.1052825349938
Condition 3: 24 Hour
Replicate 16.3266602459098
Replicate 25.3253764906171
Replicate 35.5589569636048


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13085.p1 GENE.S_Transcript_13085~~S_Transcript_13085.p1 ORF type:complete len:549 (+),score=96.03,PPR_2|PF13041.2|1.7e+03,PPR_2|PF13041.2|73,PPR_2|PF13041.2|5e-10,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|0.0028,PPR_2|PF13041.2|4.1e-09,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|1.3e+03,PPR|PF01535.16|15,PPR|PF01535.16|4.8e-05,PPR|PF01535.16|0.0097,PPR|PF01535.16|0.00026,PPR|PF01535.16|1.7,PPR|PF01535.16|1e+04,PPR|PF01535.16|4.4e-05,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0085,PPR|PF01535.16|0.34,PPR|PF01535.16|3e+03,PPR|PF01535.16|1.6,PPR_3|PF13812.2|7.9e+02,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|8.9e-06,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|23,PPR_3|PF13812.2|64,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.37,PPR_3|PF13812.2|0.056,PPR_3|PF13812.2|0.003,PPR_3|PF13812.2|22,PPR_1|PF12854.3|6.4,PPR_1|PF12854.3|0.019,PPR_1|PF12854.3|5.1e+03,PPR_1|PF12854.3|0.00052,PPR_1|PF12854.3|6.7,PPR_1|PF12854.3|47,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.0075,PPR_1|PF12854.3|0.0081,PPR_1|PF12854.3|0.068,PPR_1|PF12854.3|0.65 S_Transcript_13085:1074-2720(+)
ATGAGACATGCCAAAGTGATTCAAGTCCGATATCTATGCCTTTCATCATTACATACTCCGAAACTTTCATCATTACATACTGCGAAACTGCAAGTTTCCCGTGGTCCAATTACCTTGCCCACAGATGACTACCTTTCAAATCCTACTTCAACCTCTCTAGCAACCACTCTTCAACAGTATATAAATTCAGGCTCACCTTCTCATGGTTTAAAGATCCATAGTCATATTCTAAAAACGGGTTATAAACCCAATACGAACATTACGATCAAACTCCTCATACTACATCTGAAATGTGGTTCCTTGAGCTATGCTCGCCAATTGTTTGAAGAAATGCCTCAGCCTACTATGTCTGCTTATAATTATTTGCTCAATGCTTATGTAAAATATGGTCAATTTGAGGAAGCATTTGCTTTGGTCCGCCAGATGTGTGACTCTAATGGAAAGCCTGACAACTTTACACATTCGTTGATTCTGAAAGCATGGACTTCGGCACCTTGTCCCTCGTTGTCATCATGTGACGTGGGAAGACAGGTGCATGCTCAGATTATAAAATGTGATGACGATCAGGAGGATGTTATTCTTTTTGCTACCTTAATTGATTCATATGTTAAATCTAGAAGGCTTGATTATGCTAGGCGTGTGTTTGATTTAATGTCGGTGAAGAATGCAATATACTCAACTTCATTGATATCTGGTTATTTGAACAATGGCTTTGCGGAAGATGCTGAGTCACTGTTTAAGGAAATAGCGGAGAAAGATGATGTGGTCTTTAATGCTATGATTGAAGGTTATAGTAGATCAATTGATACCGCTAAGAAGTCAATTGAAGTCTATATAGAGATGCAGAGATTGGGGTTTGTGCCTACAATCTCAACATTTGCTAGTCTTATTGGAGCATGTTCTCTACTGACATCAGTTGAACTTGGTCAACAAGTTCAGAGTCACCTCGTACAGACTAGGTACTTCCTGGATGTAAAAATTGGGAGTGCTCTTATAGACATGTACTCCAAATGTGGGAAGATCGAGGATGCTCGTCAAATATTTGATCACATGCCTGAAAAGAATATATTTTCGTGTACATCCATGATTGATGGATATGGAAAAAATGGGAAATCCAGTGAAGTGATTGCAATGTTTGGTAAGATGCAGGCAGATCGTCATATAAAACCTAATTATGTTACATTCCTGTGTGCTATCTCAGCATGTGCATATGCTGGGTTGGTAGACAAAGGCTGGGAGATCTTTGAAAGCATGGAGAAGGATTACTCATTGAAGCCTAGGATGGAACACTATGCTTGCATGGTTGATCTTTTAGGGCGCTCTGGAAATGTGCAACAAGCGTGGGATTTTGTAAAGAGGATGCCAGAAACACCTACTTCAGATGTTTGGGCTGCTTTGCTGAGTTCATGTAGATTGCATGGGGAACTCGAGATAGCAAGTATAGCTGCAGAAGAACTCTTCAAATTGTGTGCTGATGGTCGGCCTGGTTCATATGTTGCTTTATCAAATGCTCTGGCTGCAGCAGGGATGTGGGATTGTGTAAATGAAGTTAGGGAACTGATGAAGCTTAGAGGCATAACAAAAGATACAGGTTTCAGTTGGACCGGAACTCATGATGGTTCAAATGGTGTCATCCTGGGCCTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13085.p1 GENE.S_Transcript_13085~~S_Transcript_13085.p1 ORF type:complete len:549 (+),score=96.03,PPR_2|PF13041.2|1.7e+03,PPR_2|PF13041.2|73,PPR_2|PF13041.2|5e-10,PPR_2|PF13041.2|0.014,PPR_2|PF13041.2|0.13,PPR_2|PF13041.2|1.1e-06,PPR_2|PF13041.2|0.0028,PPR_2|PF13041.2|4.1e-09,PPR_2|PF13041.2|0.016,PPR_2|PF13041.2|1.9,PPR_2|PF13041.2|1.3e+03,PPR|PF01535.16|15,PPR|PF01535.16|4.8e-05,PPR|PF01535.16|0.0097,PPR|PF01535.16|0.00026,PPR|PF01535.16|1.7,PPR|PF01535.16|1e+04,PPR|PF01535.16|4.4e-05,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0085,PPR|PF01535.16|0.34,PPR|PF01535.16|3e+03,PPR|PF01535.16|1.6,PPR_3|PF13812.2|7.9e+02,PPR_3|PF13812.2|1.8e+02,PPR_3|PF13812.2|8.9e-06,PPR_3|PF13812.2|0.53,PPR_3|PF13812.2|23,PPR_3|PF13812.2|64,PPR_3|PF13812.2|1.2e+03,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.37,PPR_3|PF13812.2|0.056,PPR_3|PF13812.2|0.003,PPR_3|PF13812.2|22,PPR_1|PF12854.3|6.4,PPR_1|PF12854.3|0.019,PPR_1|PF12854.3|5.1e+03,PPR_1|PF12854.3|0.00052,PPR_1|PF12854.3|6.7,PPR_1|PF12854.3|47,PPR_1|PF12854.3|1e+02,PPR_1|PF12854.3|0.0075,PPR_1|PF12854.3|0.0081,PPR_1|PF12854.3|0.068,PPR_1|PF12854.3|0.65 S_Transcript_13085:1074-2720(+)
MRHAKVIQVRYLCLSSLHTPKLSSLHTAKLQVSRGPITLPTDDYLSNPTSTSLATTLQQYINSGSPSHGLKIHSHILKTGYKPNTNITIKLLILHLKCGSLSYARQLFEEMPQPTMSAYNYLLNAYVKYGQFEEAFALVRQMCDSNGKPDNFTHSLILKAWTSAPCPSLSSCDVGRQVHAQIIKCDDDQEDVILFATLIDSYVKSRRLDYARRVFDLMSVKNAIYSTSLISGYLNNGFAEDAESLFKEIAEKDDVVFNAMIEGYSRSIDTAKKSIEVYIEMQRLGFVPTISTFASLIGACSLLTSVELGQQVQSHLVQTRYFLDVKIGSALIDMYSKCGKIEDARQIFDHMPEKNIFSCTSMIDGYGKNGKSSEVIAMFGKMQADRHIKPNYVTFLCAISACAYAGLVDKGWEIFESMEKDYSLKPRMEHYACMVDLLGRSGNVQQAWDFVKRMPETPTSDVWAALLSSCRLHGELEIASIAAEELFKLCADGRPGSYVALSNALAAAGMWDCVNEVRELMKLRGITKDTGFSWTGTHDGSNGVILGL*

Click here to download the sequence:
Link to NCBI Protein BLAST