Transcript Information: S_Transcript_131952.p1


Annotated TAIR IDAT5G04050.2
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1096092-1098512 | Forward length=695
E-Value2.1E-200
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6202215777895
Replicate 22.0576694924107
Replicate 31.3617046072088
Condition 2: 8 Hour
Replicate 12.9557211968047
Replicate 23.0138241690823
Replicate 33.0924545748159
Condition 3: 24 Hour
Replicate 11.7826783159423
Replicate 21.7027215951142
Replicate 31.9602625185323


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_131952.p1 GENE.S_Transcript_131952~~S_Transcript_131952.p1 ORF type:complete len:772 (+),score=147.52,Intron_maturas2|PF01348.17|5.9e-14 S_Transcript_131952:550-2865(+)
ATGCTCTTTCCTCTAACAAAGAAAATCATTCCAACCAGACCAACTACAAAATTATCACCATCATCAATTCTCTCTTCTTTCTCTTCCCTTTACTCAACTCTCTCTCATTCCCAAACCCTTTCCCCTGACACTCCAAACCCCACCACCACCTTAAACCCTCCCAAAACCCTAACCCAAACCCACCTCAAAACCCTAATCCTCTCCCACTATCACCATGGCAAATTTCACAACCTCCTCCAAAACGTCGTCGCTTCACCTTCTGTCCTCTTCACTGCCTCCCAAAACCTCTCAACCCGCTCCCCCCAACTCACCCTTGACTCACTCTCCCCGCATTTTGACCTCCGCCAACTTTCCCAAGATCTCACCTTTAACACCTTTGACCCCAAACCCTGTTGTGTTAGATTACAGCCCACTTGTGGCAATCAAGGTAGGTCCCTTGTGTTGCCTAATTTGAAGCTTAAAGTTGTTATTGAAGCCTTGAGATTGGTTCTTGATGCTGTCTTTGATGGTGGGTTCACCACCTTTTGTTATGGTGGGGGCCGGGCCGGGCTGGGCCGGCACACTGCCATTCGGTACCTTAAGAACACTGTTGAGAACCCCAGTTGGTGGTTCACTGTTTCATTTCATCATAGCGCTTTGTTTGAATCTGGGCATGTGGGTAGGTTGTGTAGTGTAATTAGAGAGAAAATTGATGATGGGTTGTTGATTAGTTTGATTGAGAGGTTGTTTGATTGCGGGGCGGTGAGGATCGAGTTTAGTGGGGGTTATTTAGGGAAAGGATTGCCTCAAGAATGTGGGTTATGTGGGATTTTGATGAATATATACTTGAATGGATTTGATAAGAAGTTACAAAAGATTCGCCTTCGGATGAATGAGGAGAATCCTAAGGTTGATGATGTGAGTAGTGTTGTTGTGTATAAGCCTGTGAAGGTGTATGCTGTAAGGTACTTGGACGAGGTGCTGGTGATCACGTCTGGATCAAAGGTTTTAGCAGTGGATTTGTTGAATTGGGTCGTGAAGTACTTGGAGAATGAATTGTATTTGAAGGTGGATAGGTTAAGGACATCGATTCATAGTGCTGTTTCAGAGAAGATTGGTTTTTTGGGGATGGAACTTCAGGCTGTCCCGCCATCAGTCTTGAGGCCTCCCCTTTCAGAGAAAGCAATAAGGGCGAGGAAGAAGTACCGTAGGCAAAAGCAAGTTAGGTTATTGGAGTTGAGAAATGCGAAGGAGAGGAATCGGAGGAAGTTGGGGATGAAACTATTTAGTCATGTTTTTAAGAAGATCAAACAGAGTGGTGGGTTCAAGTGTGATTACCAGATTGAAGATGAAGTGAGGGAGATATTCAGGACTTGGGCGGATGAAGTAGTGCAGGAATTCTTTGGGTCATTGGATGAACGATACAGTTGGCATCGACAGCTTACAGCTGGTGATTTTCTTTCCTTGAAAAGGATTAGGGACCAATTACCTGAAGAGCTTGTCGATGCCTATGATAAGTTCCAAGAGGAAGTTGATAAGCATTTGAATCCAATAAGTGCTAGGAAGGCCTTGGAGGAGGAAGAAAAGAAAGCAGAAGAGGAGGAGGAGAGGAAGTATAGTGACAGGACATTTGAGGATTTGACGAAACTATGCATGAAAGTAATGGCACCCATTGAGCTTGTTCGAAGGACTGTCAAGTTGGTGGGATTCACCAATAACATGGGTCGTCCTAGGCCTATTAGTATACTCGCTGCCCTTGAAGATGTTGATATTATAAAGTGGTATGCAGGAGTAGCAAGAAGGTGGCTCGACTACTTCTGCTGCTGTCGTAACTTTGATATGGTCAAAACTGTTGTAACCTATCACTTAAGATTCTCCTGTCTCTTGACATTAGCAGAAAAACATGAAGCCACAAAACAGGAGACCATTAGGCATTTCTCAAAAGATTTGAAAGTCTTTGATGGAGTTGAGCAAGTGTACTTCCCTACTGAAAGGGAGGTAAAAAGGACGGGAGATGGTTATCTTTCAGATCCAAAGCCTGCGGATGGTGCTTTAACCCTGTTTCTGATCCAACTAGCATATGACGAACCATCATATACATGTGCTGCTCATTTTTGTGATAGAAAGGACACAGTTACTTACAGAGTATGTTTACTGCAGAATCAGTTGAACTTAGATCCAACGGATCAAAAGAAATGGGTGCCTGGAATGGCAGCAATCCATGAAAGCTTGGACAGAAAATGCTTCCCCCTCTGTGCTCATCATATTAGTGAACTTTATATGGGTAGAATATCATTACAAGATATTGACTGTACTTCATTCGTTGATGTTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_131952.p1 GENE.S_Transcript_131952~~S_Transcript_131952.p1 ORF type:complete len:772 (+),score=147.52,Intron_maturas2|PF01348.17|5.9e-14 S_Transcript_131952:550-2865(+)
MLFPLTKKIIPTRPTTKLSPSSILSSFSSLYSTLSHSQTLSPDTPNPTTTLNPPKTLTQTHLKTLILSHYHHGKFHNLLQNVVASPSVLFTASQNLSTRSPQLTLDSLSPHFDLRQLSQDLTFNTFDPKPCCVRLQPTCGNQGRSLVLPNLKLKVVIEALRLVLDAVFDGGFTTFCYGGGRAGLGRHTAIRYLKNTVENPSWWFTVSFHHSALFESGHVGRLCSVIREKIDDGLLISLIERLFDCGAVRIEFSGGYLGKGLPQECGLCGILMNIYLNGFDKKLQKIRLRMNEENPKVDDVSSVVVYKPVKVYAVRYLDEVLVITSGSKVLAVDLLNWVVKYLENELYLKVDRLRTSIHSAVSEKIGFLGMELQAVPPSVLRPPLSEKAIRARKKYRRQKQVRLLELRNAKERNRRKLGMKLFSHVFKKIKQSGGFKCDYQIEDEVREIFRTWADEVVQEFFGSLDERYSWHRQLTAGDFLSLKRIRDQLPEELVDAYDKFQEEVDKHLNPISARKALEEEEKKAEEEEERKYSDRTFEDLTKLCMKVMAPIELVRRTVKLVGFTNNMGRPRPISILAALEDVDIIKWYAGVARRWLDYFCCCRNFDMVKTVVTYHLRFSCLLTLAEKHEATKQETIRHFSKDLKVFDGVEQVYFPTEREVKRTGDGYLSDPKPADGALTLFLIQLAYDEPSYTCAAHFCDRKDTVTYRVCLLQNQLNLDPTDQKKWVPGMAAIHESLDRKCFPLCAHHISELYMGRISLQDIDCTSFVDVD*

Click here to download the sequence:
Link to NCBI Protein BLAST