Transcript Information: S_Transcript_132911.p1


Annotated TAIR IDAT4G21070.1
Annotated Gene Namebreast cancer susceptibility1
Annotated Gene Symbol(s)ATBRCA1, BRCA1
Annotation TypeOrtholog
Chromosome Positionchr4:11248174-11252633 | Forward length=941
E-Value5.3E-216
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.0925545326049
Replicate 21.9127015140587
Replicate 31.4873174260968
Condition 2: 8 Hour
Replicate 12.4292027276573
Replicate 22.0297040096526
Replicate 32.9867971946496
Condition 3: 24 Hour
Replicate 11.0349894395745
Replicate 21.9876528297805
Replicate 31.5001014313527


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_132911.p1 GENE.S_Transcript_132911~~S_Transcript_132911.p1 ORF type:complete len:992 (+),score=196.34,BRCT|PF00533.22|9.1e-08,BRCT|PF00533.22|0.00033,zf-HC5HC2H|PF13771.2|13,zf-HC5HC2H|PF13771.2|4.1e+03,zf-HC5HC2H|PF13771.2|2.8e-11,zf-C3HC4_3|PF13920.2|1.4e-08,zf-C3HC4_3|PF13920.2|4.1e+03,zf-RING_2|PF13639.2|5e-08,zf-RING_2|PF13639.2|1.4e+03,zf-RING_2|PF13639.2|21,zf-C3HC4|PF00097.21|9e-08,zf-C3HC4|PF00097.21|8.2e+03,zf-C3HC4|PF00097.21|5.6e+03,BRCT_2|PF16589.1|1.3,BRCT_2|PF16589.1|0.00079,zf-RING_6|PF14835.2|3.5e-07,zf-C3HC4_2|PF13923.2|5e-07,zf-C3HC4_2|PF13923.2|1.2e+04,zf-HC5HC2H_2|PF13832.2|62,zf-HC5HC2H_2|PF13832.2|1.4e+03,zf-HC5HC2H_2|PF13832.2|7.2e-07,zf-C3HC4_4|PF15227.2|1.5e-06,zf-C3HC4_4|PF15227.2|1.1e+04,zf-RING_UBOX|PF13445.2|3.5e-06,zf-RING_UBOX|PF13445.2|4.1e+02,zf-RING_5|PF14634.2|3.3e-06,zf-RING_5|PF14634.2|4.9e+03,zf-RING_5|PF14634.2|8.9e+03,zf-RING_5|PF14634.2|8.5e+03 S_Transcript_132911:86-2977(+)
ATGGCGGATGCATCTCATTTAGAAAGAATGGGCAAAGAGCTCAAATGCCCTATTTGCTTGAGCTTGCTGGAATCTGCTGTCTCTCTTACGTGTAATCATGTTTTCTGCAATGCATGTATTCACAAGTCTATGAGATCAGGCTCCAATTGCCCAATTTGCAAAGTGCCTTATCAACGTCGAGAAATTCGCCCTGCCCCTCACATGGACAGCCTAGTGAACATATACAAAAGCATGGAAGTCTCTTCGGGGCTTAGCCTTTTTGCTACTCAAAATCCATCCGCAATAAAATCATCAGATGCACCAAAGAAGAGTGCCGATGATGGGTATGCTGGGGCAGAGGAGATTGCTGGAGAAGCCCCAGAATCCGTGAAGGGTATAAAGTCCAAAGCATTGTCAACACCAAAACCAAAAAAATCTGGTCGAAACAGAGGAAAATCTTCTTTCCCAACAAATAAAAGGGTACAAGTGCCACAGTCTCCCATCACTGAGACTCCAGTACAACAAGCAATAACTCAAATTGAGGCAAACAAATTAAAGAACAATGATGCTAAGAAGAGCTCAGCCAGAGCAAGTGAACATCCTTCTTCAAATGATGCTAAGAAGAGTTCAGCCACAGCATGTGGACATCCATCTTCAAATGGGAAAGGAAGCCCACCCTTGTCACCATTTTTCTGGCTACGGGAAGAACAAGATGTAGAGAAGTTGAGTCAGCAAACTGACCTTGATCATTTGACTGGTACACCAGGGATAATTCCTTCTTTTAGTGATATCAAGGATTCAGATGATGACGCACCCTCTAAAATGTCTCCACGAACACAAGATGAGCTGCTCCGAAACTGCAGTAATGCTGATCATTTTGACAGTGAGATGTTTGAATGGACCCAAAGAGCTTGCTCTCCTGAACTTTGCTCCAGTCCTATCAAGATGCAGGTTGGGGAGACAAGTGAATTTGAGAAAATGCAAAAAGAGGATTTGGCAACACCCGCAAAAGGTCTGGTTACTGGTAGAAAAGTAATGACAGAGCACCTGGGCAATGCCTCCCCCCTGGAAAATAATAGTATTAGGGATAGTGAACTTCAAAGTAATTCCTCAGGAAGTGAATATGGTGGTGGGAAAAATCGGAGCAAAAAGACCCACAAGAGAGGTAGGAACGCAGACAAAAGAACCAAAAATAAGCGTCAAAAGAGAAATGTGGGGCAAGTTAGCAAGGCTCATGATGGTCCAGAAACACATGATGGTTTTATGCAGAGACGAGGATGTGATTCTCAAACAGCTATGGGCAGTTCAAAAGCTGATTGCACCCGTAAGGCCAGTTATATTGGGTCAAACGCTTCGGAGATGCTAAATCAAGTGCATGATCATGTTGCCTCTAAGCTGCCTGCTTCTTTGCAAAAGAGAGAGAAAAATTCTAAGGGCATTAAGCGATGCCATATAAAGAGGCAAGTCAGGATAAAGAAACAGAAGCAGAGTCTTGCTAAATCGGGCATAATTGAAGAACCTATTGTTTCTCTAGATGGTGCACATGGCGAAGTAGATTTTTGCGAAGGAAAGCTAGGAAATGGAAATAATGATGTTCAATTAGAGGGTGCGGCACAAGCTGAAGGGAAAAATGTGAATCAAATTCCTATAATTCATAATCTAGGGCGTTCATTTACAGCAAGAAAAGTTTCGCTTCAACGAGATATGCCAGCTCTGCGCAAATGTGACACAACTTTTAAATGTGCTTTCTGCCATTCAACAGAAGAGACAGAGGAATCTGGGGTGATGCTACATTATAGTGAAGGTCGACCAGTTTCAGAGAAAGATGGGGCAGCTTCTGTCATTCACTCACACAAAAACTGCACAGAGTGGGCGCCAAATGTTTATTTTGAAGATGATACTGCTATCAACCTTGAAGAAGAGTTGGCAAGAAGCAGAAGAATTAAGTGCTCTCTGTGTGGGGTGAAAGGGGCAGCTCTTGGCTGTTATGAGAAAAGCTGTCGCAAAAGTTTCCATGTCCCTTGTGCCAAGATGCTTCGGGAGTGTCGTTGGGATACTGATCACTTCGTCATGTTATGCCCAGTTCATGCATCTTCAAAGTTGCCCTATGAATTGCCCACATTGGAGGTGAAAAAAGAAAAGCCCAATCTGAAGCGGAAGTTTCTCCGACAACAATCTCAAGTCCATGCTGGACATAAAACTAACAAAAAGTTGTGGAATTCTGGGCAATCATCTGAAAAATTAGTTCTTTGCTGTTCAGGTCTTGCAACTGCAGAGAAGGAAACCGTTTCTGAGTTTGCTAAGTTATCTGGAGTTGTGGTATCAAAAAGTTGGAATTCAAATGTTACCCATGTTATTGCTTCAGTAGATGAGAACGAAGCGTGTAGAAGAACCCTGAAAGTTTTGATGGGGATCCTAGAGGGCAAATGGGTACTAAGTATCAAATGGGTTCAGGCTTGCATGAAGGCCACTAGACTAGTTGAAGAGACTCCTTATGAAATCAGTTGTGACATTCATGGAATCAAGCATGGTCCTCGACTAGGAAGATTAAGATTATTGAATAAGCAACCAAAGCTATTTGCTGGGTTCAAGTTCTATTTCATTGGAGATTTTGTACCATCATACAAGGGATACCTACAAGACCTTGTTACAACTGCTGGAGGAACTGTACTACATCGGAAGCCCATTGCAGAAACCCATAGTACGTCTACATCTGATTCATCCATCCGATCAACAACTATCATAATCTATAGCATTGAGCAGCCCGAGAAATCTGATAGCAACAAGAAGGATATTATTCTAGATCACAGGCGTTTTGATGCAGAAACTCTTGCACGTTCAAGTGGTTCAAAGGCAGTGAATAATTCATGGGTACTCAATTGTATAGCTGGGCACAAACTGCTTGATATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_132911.p1 GENE.S_Transcript_132911~~S_Transcript_132911.p1 ORF type:complete len:992 (+),score=196.34,BRCT|PF00533.22|9.1e-08,BRCT|PF00533.22|0.00033,zf-HC5HC2H|PF13771.2|13,zf-HC5HC2H|PF13771.2|4.1e+03,zf-HC5HC2H|PF13771.2|2.8e-11,zf-C3HC4_3|PF13920.2|1.4e-08,zf-C3HC4_3|PF13920.2|4.1e+03,zf-RING_2|PF13639.2|5e-08,zf-RING_2|PF13639.2|1.4e+03,zf-RING_2|PF13639.2|21,zf-C3HC4|PF00097.21|9e-08,zf-C3HC4|PF00097.21|8.2e+03,zf-C3HC4|PF00097.21|5.6e+03,BRCT_2|PF16589.1|1.3,BRCT_2|PF16589.1|0.00079,zf-RING_6|PF14835.2|3.5e-07,zf-C3HC4_2|PF13923.2|5e-07,zf-C3HC4_2|PF13923.2|1.2e+04,zf-HC5HC2H_2|PF13832.2|62,zf-HC5HC2H_2|PF13832.2|1.4e+03,zf-HC5HC2H_2|PF13832.2|7.2e-07,zf-C3HC4_4|PF15227.2|1.5e-06,zf-C3HC4_4|PF15227.2|1.1e+04,zf-RING_UBOX|PF13445.2|3.5e-06,zf-RING_UBOX|PF13445.2|4.1e+02,zf-RING_5|PF14634.2|3.3e-06,zf-RING_5|PF14634.2|4.9e+03,zf-RING_5|PF14634.2|8.9e+03,zf-RING_5|PF14634.2|8.5e+03 S_Transcript_132911:86-2977(+)
MADASHLERMGKELKCPICLSLLESAVSLTCNHVFCNACIHKSMRSGSNCPICKVPYQRREIRPAPHMDSLVNIYKSMEVSSGLSLFATQNPSAIKSSDAPKKSADDGYAGAEEIAGEAPESVKGIKSKALSTPKPKKSGRNRGKSSFPTNKRVQVPQSPITETPVQQAITQIEANKLKNNDAKKSSARASEHPSSNDAKKSSATACGHPSSNGKGSPPLSPFFWLREEQDVEKLSQQTDLDHLTGTPGIIPSFSDIKDSDDDAPSKMSPRTQDELLRNCSNADHFDSEMFEWTQRACSPELCSSPIKMQVGETSEFEKMQKEDLATPAKGLVTGRKVMTEHLGNASPLENNSIRDSELQSNSSGSEYGGGKNRSKKTHKRGRNADKRTKNKRQKRNVGQVSKAHDGPETHDGFMQRRGCDSQTAMGSSKADCTRKASYIGSNASEMLNQVHDHVASKLPASLQKREKNSKGIKRCHIKRQVRIKKQKQSLAKSGIIEEPIVSLDGAHGEVDFCEGKLGNGNNDVQLEGAAQAEGKNVNQIPIIHNLGRSFTARKVSLQRDMPALRKCDTTFKCAFCHSTEETEESGVMLHYSEGRPVSEKDGAASVIHSHKNCTEWAPNVYFEDDTAINLEEELARSRRIKCSLCGVKGAALGCYEKSCRKSFHVPCAKMLRECRWDTDHFVMLCPVHASSKLPYELPTLEVKKEKPNLKRKFLRQQSQVHAGHKTNKKLWNSGQSSEKLVLCCSGLATAEKETVSEFAKLSGVVVSKSWNSNVTHVIASVDENEACRRTLKVLMGILEGKWVLSIKWVQACMKATRLVEETPYEISCDIHGIKHGPRLGRLRLLNKQPKLFAGFKFYFIGDFVPSYKGYLQDLVTTAGGTVLHRKPIAETHSTSTSDSSIRSTTIIIYSIEQPEKSDSNKKDIILDHRRFDAETLARSSGSKAVNNSWVLNCIAGHKLLDI*

Click here to download the sequence:
Link to NCBI Protein BLAST