Transcript Information: S_Transcript_132985.p1


Annotated TAIR IDAT2G06040.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:2352333-2355419 | Reverse length=762
E-Value6E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.44781492463044
Replicate 20.84856882913519
Replicate 30.22166750100481
Condition 2: 8 Hour
Replicate 10.46136661743797
Replicate 20.21511392922814
Replicate 30.56364020109326
Condition 3: 24 Hour
Replicate 10.26255869580041
Replicate 20.21792126515719
Replicate 30.78818888765988


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_132985.p1 GENE.S_Transcript_132985~~S_Transcript_132985.p1 ORF type:3prime_partial len:416 (+),score=91.35 S_Transcript_132985:101-1246(+)
ATGCCGGTTCTAATGTCCAGTCAAGTTCCCTCACCACCACCACCAAACCCTTCTGCATCTTCCAAAACACTAAAATCAGGGTTTATCCAACCGCCTTCAACTCCTGCTAAAAGTACTGAGCCGGTGAATTCAACCGAGTTAGTCCCTGACTCGCCTCCGATTGCCGGTCCTACTCGTCGGAGAAGTCTCCGGCTTTTGACAAAATCGAATTCCACCGAAAAAATGTCCGACTTTTCGTCTCCCGCTCGTAAACGCGCCAGAAAGAACGAGGTTCTTGAAAATGTGAACGAAAATGGAGGTCATGATGATGGTAATGTTGAATTTGAAGTACTTAATGTTGAAGTAAAATTCGAGGATGAGAAGGAATTTAGTTCTGTATGTCAGGTTTCAGTCGATGATTGTAGTGTTAGGGTTTATGATGTAAAGGTAAATTTTGAAGTGCCTTTTGGTTTTAATTCTTTAGGTCAGGCTTTAGTTAATGATTGTTATATTATGGTTTCTGATTCTGAGGATGAAAACTGTGAGTTCAAAGTGTGTAGAGTAGTTAAGGGAATGGAGGTTAAAACAGAAGATAAAGGAAAAGGTGTTATGATTGAAGAGGAAAAAAATGAAGATGTTGTTAAAGTAAGTGGTGCAACAAGAAGGTTTACTAGAGAAGAGAAGGGGAAAGGTATACTGATAAATGATGATTGTGTTTTGAATACTGATGACTTTGATATGTTGATTTTGAAACTTGGGTATAATGATTTGCTTGCTAATAATAATAATAATAACAACAATAATTACGGGGGTTTAGGTTCTGATGTTGATGGTATACAAGAGAACTTAGGGTTTGATGATGTGTTTGTTGGTAACAATGGGGATGTTGTGGGCGGTTTAGAGTCTGATGATGTTGGTGGTGTACAACAGAATGTGGGGTTGCATAATGATGAAGTGATGAATAGGCCTGATACTGTAATGAACCGTTTCAAGGAGATAGCGAGACAAAATGCACTTAGGTTCGCACACTTTAATGCCAGAGAGGAAGAAGGGGGTCATGGTGATGTGGAGGGTGAAGGGGAAGTGAGGGTGGAAGAGCCAGCTGAGGATTGGCCCGGCCCGTTTTCGACTGCCATGAAGATTATAAAGGATAGGGAGAAGAGCTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_132985.p1 GENE.S_Transcript_132985~~S_Transcript_132985.p1 ORF type:3prime_partial len:416 (+),score=91.35 S_Transcript_132985:101-1246(+)
MPVLMSSQVPSPPPPNPSASSKTLKSGFIQPPSTPAKSTEPVNSTELVPDSPPIAGPTRRRSLRLLTKSNSTEKMSDFSSPARKRARKNEVLENVNENGGHDDGNVEFEVLNVEVKFEDEKEFSSVCQVSVDDCSVRVYDVKVNFEVPFGFNSLGQALVNDCYIMVSDSEDENCEFKVCRVVKGMEVKTEDKGKGVMIEEEKNEDVVKVSGATRRFTREEKGKGILINDDCVLNTDDFDMLILKLGYNDLLANNNNNNNNNYGGLGSDVDGIQENLGFDDVFVGNNGDVVGGLESDDVGGVQQNVGLHNDEVMNRPDTVMNRFKEIARQNALRFAHFNAREEEGGHGDVEGEGEVRVEEPAEDWPGPFSTAMKIIKDREKSL

Click here to download the sequence:
Link to NCBI Protein BLAST