Transcript Information: S_Transcript_132987.p1


Annotated TAIR IDAT2G06040.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:2352333-2355419 | Reverse length=762
E-Value1.3E-168
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6574489605929
Replicate 21.8925777176247
Replicate 31.5170288200377
Condition 2: 8 Hour
Replicate 11.5536712099439
Replicate 21.7350669920352
Replicate 31.9787919633296
Condition 3: 24 Hour
Replicate 10.82142922643832
Replicate 21.6245505360249
Replicate 31.748649377088


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_132987.p1 GENE.S_Transcript_132987~~S_Transcript_132987.p1 ORF type:complete len:851 (+),score=171.74,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|0.38,LRR_4|PF12799.3|4.6,LRR_4|PF12799.3|0.84,LRR_4|PF12799.3|0.13,LRR_4|PF12799.3|0.0066,LRR_4|PF12799.3|0.54 S_Transcript_132987:287-2554(+)
ATGTCCGACTTTTCGTCTCCCGCTCGTAAACGCGCCAGAAAGAACGAGGTTCTTGAAAATGTGAACGAAAATGGAGGTCATGATGATGGTAATGTTGAATTTGAAGTACTTAATGTTGAAGTAAAATTCGAGGATGAGAAGGAATTTAGTTCTGTATGTCAGGTTTCAGTCGATGATTGTAGTGTTAGGGTTTATGATGTAAAGGTAAATTTTGAAGTGCCTTTTGGTTTTGAAGTTGAGAATGAGAAGGAATTTAATTCTTTAGGTCAGGTTTTAGCCGATGATTATGATATTAGGGTTTCTGATTCTGAGGATGAAAACTCTGAGTTCAAAGTGCGTAGAGTAATTAAGGGGATGGAGGTTAAAACAGAAGGTAAAGGAAAAGGTGTTATGATTGAAGAGGAAAAAAATGAAGATGTTGTTAAAGTAAGTGGTGCAACAAGAAGGTTTACTAGAGAAGAGAAGGGGAAAGGTATACTGATAAATGATGATTGTGTTTTGAATACTGATGACTTTGATATGTTGATTTTGAAACTTGGGTATAATGATTTGCTTGCTAATAATAATAATAATAACAACAATAATTACGGGGGTTTAGGTTCTGATGTTGATGGTATACAAGAGAACTTAGGGTTTGATGATGTGTTTGTTGGTAACAATGGGGATGTTGTGGGCGGTTTAGAGTCTGATGATGTTGGTGGTGTACAACAGAATGTGGGGTTGCATAATGATGAAGTGATGAATAGGCCTGATACTGTAATGAACCGTTTCAAGGAGATAGCAAGACGAAACGCGTTTAGGTTCGCCCATTTTAATGCCAGAGAGGAAGAAGGGGGTCATGGTGATGTGGAGGGTGAAGGGGAAGTGAGGGTGGAAGAGCCAGCTGAGGATTGGCCCGGCCCGTTTTCGACTGCCATGAAGATTATAAAGGATAGGGAGAAGAGCTTGGGTGGTCAGGTGAAAAAGGGGTTTTCAGAGAAAGGGGGGAAGACACCGTTGATTTCGTGGACTCCTAGGAAAGAAAGAGACTCTGAGAGGGTGAAGCGAGCAGTGCCTCCTTTGCAAGAATTGTGTATGAAAATACTTGTGAAGAATGTTGATGCTGTCGCTTCTCTTAACTATGTTCCGGATGTTTTGAGGCATAGGCTCAGTCAGATGCTTTGTGATTCTAGGAGGATAAATGGGCATTTCTTTAGTCTTTTGGTGGCTGGGTCTCCTTCGGAGATACGTATTGCAGACTGTTCGTGGCTTGATGAGGACAAGTTTGAGAAGTCATTTGAGGGTTGCGACACCAGCAACTTGACGGTTCTACAACTTGATCTGTGTGGGCACTGTATGTCAGACATTTCACTGGCTAAAGCCTTTGTACCAAAAGGGTTGCCTGCTTTGACTACAGTTTCTTTGAAAGGTGCTTGTCGTATTTCAGATGTCGGATTAGGTGCACTTGTTAAATGTGCCCCTGCCTTGAGATCTCTAAATCTGAGTCAATGCTCCCTTCTGACTGATACTGGCATTGCCGGGATTGCTGATTTACTGGGGTCCAATTTGCGAGAACTTTATTTGGATGAGTGTGAAAGTTTAGATGCAATGCGTATTCTTCCAGCACTCAAGGGACTAAGACATTTGGAAGTGCTGTCTCTCAAAGGGGTAGGCAGCGTCTCAGACAAATTTATTGTAGAGCTCATAGGTTCAAATGGTCAGAATATGAAGGAGCTACTTTTGGCTAACTGTGGAAACTTGACTGATTCTTCTTTGAAAGTCATTGGTGAAACATGTTCTCAACTATGTGTCCTCGATCTCAGCCATCTGAGCAAGTTGACTGATATTGGCATGGCTCATGTCGCAAATGGCTGCCGTGCACTCCAAGATCTAAAACTCTGCCGTAGTGCATTCAGCGATGGTGCTATTGCTGCCTTCCTTGAAACCTGTGGAGAATCTTTGAGAGAACTATCTCTTAATAACATAACTAAGGTTGGCCAGAATACTGCAATTTCAATTGCTAGACGTTGCAAAAATCTTGAGAGCTTGGATCTCTCGTGGTGCCGCAGTCTCACAGATGAGGCGCTGGGATTGATTGCTGATAGTTGTTTGTCCTTGAGAGTGCTCAAACTTTTTGGTTGTACGCAGGTTACAAAAACGTTTTTGGATGGCCATTCAAATCCGCACCTACAAGTAATTGGGTTGAAGCTGACTCCCATTCTAGAACACATCAAGAGGCCTGATTTCCGACAAGGCCCCTTGCAGTATTCTGCAGTGCCATATCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_132987.p1 GENE.S_Transcript_132987~~S_Transcript_132987.p1 ORF type:complete len:851 (+),score=171.74,LRR_4|PF12799.3|0.23,LRR_4|PF12799.3|0.38,LRR_4|PF12799.3|4.6,LRR_4|PF12799.3|0.84,LRR_4|PF12799.3|0.13,LRR_4|PF12799.3|0.0066,LRR_4|PF12799.3|0.54 S_Transcript_132987:287-2554(+)
MSDFSSPARKRARKNEVLENVNENGGHDDGNVEFEVLNVEVKFEDEKEFSSVCQVSVDDCSVRVYDVKVNFEVPFGFEVENEKEFNSLGQVLADDYDIRVSDSEDENSEFKVRRVIKGMEVKTEGKGKGVMIEEEKNEDVVKVSGATRRFTREEKGKGILINDDCVLNTDDFDMLILKLGYNDLLANNNNNNNNNYGGLGSDVDGIQENLGFDDVFVGNNGDVVGGLESDDVGGVQQNVGLHNDEVMNRPDTVMNRFKEIARRNAFRFAHFNAREEEGGHGDVEGEGEVRVEEPAEDWPGPFSTAMKIIKDREKSLGGQVKKGFSEKGGKTPLISWTPRKERDSERVKRAVPPLQELCMKILVKNVDAVASLNYVPDVLRHRLSQMLCDSRRINGHFFSLLVAGSPSEIRIADCSWLDEDKFEKSFEGCDTSNLTVLQLDLCGHCMSDISLAKAFVPKGLPALTTVSLKGACRISDVGLGALVKCAPALRSLNLSQCSLLTDTGIAGIADLLGSNLRELYLDECESLDAMRILPALKGLRHLEVLSLKGVGSVSDKFIVELIGSNGQNMKELLLANCGNLTDSSLKVIGETCSQLCVLDLSHLSKLTDIGMAHVANGCRALQDLKLCRSAFSDGAIAAFLETCGESLRELSLNNITKVGQNTAISIARRCKNLESLDLSWCRSLTDEALGLIADSCLSLRVLKLFGCTQVTKTFLDGHSNPHLQVIGLKLTPILEHIKRPDFRQGPLQYSAVPYL*

Click here to download the sequence:
Link to NCBI Protein BLAST