Transcript Information: S_Transcript_132990.p1


Annotated TAIR IDAT2G06040.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr2:2352333-2355419 | Reverse length=762
E-Value1E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46964119826789
Replicate 20.56238483185822
Replicate 30.54243341422355
Condition 2: 8 Hour
Replicate 10.37633041736117
Replicate 20.35093095905453
Replicate 30.33436623694088
Condition 3: 24 Hour
Replicate 10.4711641537187
Replicate 20.44438846228132
Replicate 30.69236984641495


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_132990.p1 GENE.S_Transcript_132990~~S_Transcript_132990.p1 ORF type:3prime_partial len:510 (+),score=125.72 S_Transcript_132990:101-1528(+)
ATGCCGGTTCTAATGTCCAGTCAAGTTCCCTCACCACCACCACCACCAAATTCCTCATCTTCCAAAGCCCTGAAATTAGGGTTTATCGAACCGCCTTCAACTCCTGCTAAAAGTACTGAGCCGGTGAATTCAACCGTGTTAGTCTCTGACTCGCCGCCGATTCCTGGTCCAACTCGTCGGAGAAGTCTCCGGCTTTTGACAAAATCGAATTCCACCGAAAAAATGTCCGACTTTTCGTCTCCCGCTCGTAAACGCGCCAGAAAGAACGAGGTTCTTGAAAATGTGAACGAAAATGGAGGTCATGATGATGGTAATGTTGAATTTGAAGTACTTAATGTTGAAGTAAAATTCGAGGATGAGAAGGAATTTAGTTCTGTAGGTCCGGTTTTAGTTGATGATTTTAATGTTAGGGTTTCTGATGAAAAGGTTAATTTTGAAGTGCCTTTTGGTTTTGAAGTTGAGAATGAGAAGGAATTTAATTCTTTAGGTCAGGTTTTAGCCGATGATTATGATATTAGGGTTTCTGATTCTGAGGATGAAAACTGTGAGTTCAAAGTGTGTAGAGTAGTTAAGGGAATGGAGGTTAAAACAGAAGATAAAGGAAAAGGTGTTATGATTGAAGAGGAAAAAAATGAAGATGTTGTTAAAGTAAGTGGTGCAACAAGAAGGTTTACTAGAGAAGAGAAGGGGAAAGGTATACTGATAAATGATGATTGTGTTTTGAATACTGATGACTTTGATATGTTGACTTTGAAACTTGGGTATGATGATTCGTTTGCTAATAATAATAATAATTATGGGGGTTTCGGTTCTGATGTTGATGGTGTACAAGAGAACTTAGGGTTTGATGATGTGTTTGTTGGTAACAATGGGGATGTTGTGGGCGGTTTAGAGTCTGATGATGTTGGTGGTGTACAACAGAATGTGGGGTTGCATAATGATGAAGTGATGAATAGGCCTGATACTGTAATGAACCGTTTCAAGGAGATAGCAAGACGAAACGCGTTTAGGTTCGCCCATTTTAATGCCAGAGAGGAAGAAGGGGGTCATGGTGATGTGGAGGGTGAAGGGGAAGTGAGGGTGGAAGAGCCAGCTGAGGATTGGCCCGGCCCGTTTTCGACTGCCATGAAGATTATAAAGGATAGGGAGAAGAGCTTGGGTGGTCAGGTGAAAAAGGGGTTTTCAGAGAAAGGGGGGAAGACACCGTTGATTTCGTGGACTCCTAGGAAAGAAAGAGACTCTGAGAGGGTGAAGCGAGCAGTGCCTCCTTTGCAAGAATTGTGTATGAAAATACTTGTGAAGAATGTTGATGCTGTCGCTTCTCTTAACTATGTTCCGGATGTTTTGAGGCATAGGCTCAGTCAGATGCTTTGTGATTCTAGGAGGATAAATGGGCATTTCTTTAGTCTTTTGGTGGCTGGGTCTCCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_132990.p1 GENE.S_Transcript_132990~~S_Transcript_132990.p1 ORF type:3prime_partial len:510 (+),score=125.72 S_Transcript_132990:101-1528(+)
MPVLMSSQVPSPPPPPNSSSSKALKLGFIEPPSTPAKSTEPVNSTVLVSDSPPIPGPTRRRSLRLLTKSNSTEKMSDFSSPARKRARKNEVLENVNENGGHDDGNVEFEVLNVEVKFEDEKEFSSVGPVLVDDFNVRVSDEKVNFEVPFGFEVENEKEFNSLGQVLADDYDIRVSDSEDENCEFKVCRVVKGMEVKTEDKGKGVMIEEEKNEDVVKVSGATRRFTREEKGKGILINDDCVLNTDDFDMLTLKLGYDDSFANNNNNYGGFGSDVDGVQENLGFDDVFVGNNGDVVGGLESDDVGGVQQNVGLHNDEVMNRPDTVMNRFKEIARRNAFRFAHFNAREEEGGHGDVEGEGEVRVEEPAEDWPGPFSTAMKIIKDREKSLGGQVKKGFSEKGGKTPLISWTPRKERDSERVKRAVPPLQELCMKILVKNVDAVASLNYVPDVLRHRLSQMLCDSRRINGHFFSLLVAGSP

Click here to download the sequence:
Link to NCBI Protein BLAST