Transcript Information: S_Transcript_13333.p1


Annotated TAIR IDAT5G24870.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8545008-8546923 | Reverse length=520
E-Value2.6E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 129.993963279577
Replicate 234.435569908281
Replicate 335.914801847012
Condition 2: 8 Hour
Replicate 145.205183104195
Replicate 245.230924473059
Replicate 341.974037479863
Condition 3: 24 Hour
Replicate 139.32871946038
Replicate 232.041940504491
Replicate 331.264349053892


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13333.p1 GENE.S_Transcript_13333~~S_Transcript_13333.p1 ORF type:complete len:551 (+),score=100.04,zf-RING_2|PF13639.2|1.3e-11,zf-rbx1|PF12678.3|2.5e-07,zf-RING_11|PF17123.1|2.2e-07,zf-RING_11|PF17123.1|1.1e+03,zf-C3HC4|PF00097.21|8.7e-06 S_Transcript_13333:2605-4257(+)
ATGGATGAATATTCCAGTAGAAGAACTGCGGGCGGGCTATATATATCCAGAAAAATGCCCAGCCTTGTTCTGAGAGACTCAGCCGAGAACAATAGAGATCGAAATGCTCAGGTGTGCAGTCGAGTTGGGTGTGCTAGCAGGCTGAGCACAACGAAAGGTGCCCAAGTCGGGTCTCCCAACAAAGCCAAAACTTCAAGGACTCCTTTCCGTCCATCAGGACCTGGCAAGGAAATCATTGGAAGTTCTTTGAGAACTCCTGTTGCAGTAGGCTCTTCGAGAAAGCCTTTTTCAGACCTGAAAAAGAAATCCTCTCCTCGTGCTGAACCTGATCCGGAAACCAGCAGTCTTCGTGAAGAATCTGAGGAAGTTTCAGAATCCAGACCCTCATCCGGGAAGACTGAGATCAGGGTTCACCCTGAACCAGAAAATCATGAGCCTGCTGAAGCCACGTCAGCAGAAGCTGCAAGCTCTAGTTCGGGTCCCAGTAAGAGATATGTGAAGAAAAACTCTCAGAGATTCGGATTGGGGCGCCAAGATAGCCCCGCAGGTTCCTCTGGTTCATTTCCATTCAAGGAGGCCAACCAAGGGGCAAGAAATGGTGCTACTTCAAGCAGGTATAATCTGAGGAACTTGAAATGTAATTCGATCCCTGATGCTGTCCCGCCAGGTTGTTCTTCCCCCACAGAGTCTAATCTCAGTAGGAGGAGGGATATTGGTAGGAAGAGAATTGGTGAACCCGAGAGTAGTTTATCTGTGAGAGGCAAGAAGATTAATGGACCTATGTCAGATGATAGAAGGAATGACAATTCTAGTCGTGGCATTTCTATCTCAGACTCTAGACGGACCAGAAACTTAAGTCCTGCAAGTGATAATGAGACTGCATCATATAGGCCACGGAGGTCATCTGCTAGGACAAGGCTCTCAAATCAGGAAAACAGAAACAGATTACCACTGGTCGAGTCCCCTCTCTTGACCCCCGCTTCCCCTCAACCAGACATATCTCTTGAGGCAGCTAGTTTCAGTTCAGAAAATCAATTCTCTGCCTCGAACCCATCAAACCGTACCAGTTCATTTAGTAGACCAGGTAGTAGCAGTGAGCATAGGCGACCGAACAGGTCTGTTGGTTCATATGAAGTTGGCACGGCCCGCTCTTTCATGAACCGAGATGCCTTAAGACAGTACAACCTAGATGGTATAGCTGAGATGTTATTAGCTCTAGAGAGAATTGAACAAGACGAGGAGCCAACATATGAGCAATTGCTTGTTCTGGAGACAAATCTTTTCCTTGGAGGACTTGCCTTCCATGACCAGCACAGGGACATGAGGCTTGACATTGATAATATGTCATATGAGGAGCTATTAGCTTTAGAGGAGAGGATGGGAACAGTAAGTACGGCACTACCCGAAGAAGATTTGGCAAAGTGCCTAATTAGGAGCATCTATAAGGGAACCAATGACTACAGGGAGGGTGAGGATGATGTCAAATGCAGTATATGTCAGGAAGAATATGCAGAAGGCAACGAAGTCGGAAGACTCAACAGTTGTGATCACAGGTACCATGTGGAGTGTATACACCAATGGTTGAGGCTGAAGAATTGGTGCCCCATCTGCAAGGCCTCAGTAGCACCTTCGCCTTCCTCATCTCCGCCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13333.p1 GENE.S_Transcript_13333~~S_Transcript_13333.p1 ORF type:complete len:551 (+),score=100.04,zf-RING_2|PF13639.2|1.3e-11,zf-rbx1|PF12678.3|2.5e-07,zf-RING_11|PF17123.1|2.2e-07,zf-RING_11|PF17123.1|1.1e+03,zf-C3HC4|PF00097.21|8.7e-06 S_Transcript_13333:2605-4257(+)
MDEYSSRRTAGGLYISRKMPSLVLRDSAENNRDRNAQVCSRVGCASRLSTTKGAQVGSPNKAKTSRTPFRPSGPGKEIIGSSLRTPVAVGSSRKPFSDLKKKSSPRAEPDPETSSLREESEEVSESRPSSGKTEIRVHPEPENHEPAEATSAEAASSSSGPSKRYVKKNSQRFGLGRQDSPAGSSGSFPFKEANQGARNGATSSRYNLRNLKCNSIPDAVPPGCSSPTESNLSRRRDIGRKRIGEPESSLSVRGKKINGPMSDDRRNDNSSRGISISDSRRTRNLSPASDNETASYRPRRSSARTRLSNQENRNRLPLVESPLLTPASPQPDISLEAASFSSENQFSASNPSNRTSSFSRPGSSSEHRRPNRSVGSYEVGTARSFMNRDALRQYNLDGIAEMLLALERIEQDEEPTYEQLLVLETNLFLGGLAFHDQHRDMRLDIDNMSYEELLALEERMGTVSTALPEEDLAKCLIRSIYKGTNDYREGEDDVKCSICQEEYAEGNEVGRLNSCDHRYHVECIHQWLRLKNWCPICKASVAPSPSSSPP*

Click here to download the sequence:
Link to NCBI Protein BLAST