Transcript Information: S_Transcript_133983.p1


Annotated TAIR IDAT1G04880.1
Annotated Gene NameHMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:1376106-1378264 | Reverse length=448
E-Value7.6E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1106105339821
Replicate 23.6102746548661
Replicate 33.0658054788323
Condition 2: 8 Hour
Replicate 12.3817968406149
Replicate 22.8473261905107
Replicate 31.6056093001155
Condition 3: 24 Hour
Replicate 13.9717969982898
Replicate 24.3561611861031
Replicate 33.5376373970812


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_133983.p1 GENE.S_Transcript_133983~~S_Transcript_133983.p1 ORF type:5prime_partial len:385 (+),score=100.56,HMG_box|PF00505.15|1.1e-14,HMG_box_2|PF09011.6|8.4e-09 S_Transcript_133983:2-1156(+)
GTTACAGCCACTTTCAACTTTCCCTCCACAGCCACAAATGCCTCATTCGTGTTGCGCAAGTACTATTATTCACTGCTCCAGCATTATGAGCGAATCTACTACTTCAAAGCCCAGGCTTGGAATCCTTCATCTACTGGCATTTCACAAAGTCCGAACACCACCACTCCTGTTCCAGTTCATGGGTTTGCTAGAATGTCACCCTCACCTGTTCAAGTAGCAACTTCCCAGCCTCCGAGGATAAACACTATCGAGTTTGTATCTGGAGCATCATCTGTTGGCTCTCCTGTTATTGGAGTGATAGATGGCAAGTTTGAAAGCGGTTATCTTGTTACTGTGACAATTGGCAAGGAGAAGCTGAAAGGGGTGCTCTATCAGCCTCCACCTGCTCCCAGTAGTCAAGGGCCGCAGACTTGTTCTGGTTTCTCGAGTGGCAAAACTGACAGCACTCCCACTACATCAGGTCTGCATCACAGGAGGAGGAGGAGGAAGAAATCCGAGATAAGAAAAAGGGATCCTGCTCACCCAAAGCCCAACAGAAGTGGGTACAATTTCTTCTTTGCTGAGCAACATTCCAGACTCAAACCACTGCATCCAGGGAAGGACCGTGAGATTAGTAGGATGATTGGTGAATTATGGAACAAATTGAAAGATAGTGAGAGATCGGTATATCAAGATAAGGCTATAAAGGATAAAGAAAGATACATGATGGAAATGGAGAGTTATCGAGAGAGATTGAAGGCTAATCAAGTCATAAGTGATGCAGTGCCCATACAGCAGAGGTTTCCTTATTTGGATGTGAATATGGTGGAAGTCGATGTGAAAGATGGGACAGAAAGGGATTCCCCAGAAACTGAAGATGAAGATGAGAGTGGTTCTAGTAAGTGTGATTCTGATGAGGACGATGATCATATGGTAGATTCAGACAATGATGAATATCCAGCAGAAGGCGTTGGGGTCAAATCAGGCAACCTAGGTGGTTTTGAAACTACAACAGCTGAAGGGGGATTCCAGGTGGAGTTTGTCAAGGAAGACGAAAAAACTTGTGACGAAAGTGAAGGGAGCTTGGGAGCTGCTACTCATACTGCTGGGGAGAGGAAGCAAAGTTCACCACCTGAGGCGCAACATCTCAACTCTGTCCCTTTTACTATGTCGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_133983.p1 GENE.S_Transcript_133983~~S_Transcript_133983.p1 ORF type:5prime_partial len:385 (+),score=100.56,HMG_box|PF00505.15|1.1e-14,HMG_box_2|PF09011.6|8.4e-09 S_Transcript_133983:2-1156(+)
VTATFNFPSTATNASFVLRKYYYSLLQHYERIYYFKAQAWNPSSTGISQSPNTTTPVPVHGFARMSPSPVQVATSQPPRINTIEFVSGASSVGSPVIGVIDGKFESGYLVTVTIGKEKLKGVLYQPPPAPSSQGPQTCSGFSSGKTDSTPTTSGLHHRRRRRKKSEIRKRDPAHPKPNRSGYNFFFAEQHSRLKPLHPGKDREISRMIGELWNKLKDSERSVYQDKAIKDKERYMMEMESYRERLKANQVISDAVPIQQRFPYLDVNMVEVDVKDGTERDSPETEDEDESGSSKCDSDEDDDHMVDSDNDEYPAEGVGVKSGNLGGFETTTAEGGFQVEFVKEDEKTCDESEGSLGAATHTAGERKQSSPPEAQHLNSVPFTMS*

Click here to download the sequence:
Link to NCBI Protein BLAST