Transcript Information: S_Transcript_133985.p1


Annotated TAIR IDAT1G04880.1
Annotated Gene NameHMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:1376106-1378264 | Reverse length=448
E-Value5E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.68880709079291
Replicate 20.51912446017682
Replicate 30.21697336568942
Condition 2: 8 Hour
Replicate 10
Replicate 20.47375679472362
Replicate 30.55170429095246
Condition 3: 24 Hour
Replicate 10.30839835516133
Replicate 20.58659277021134
Replicate 30.29672993417784


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_133985.p1 GENE.S_Transcript_133985~~S_Transcript_133985.p1 ORF type:5prime_partial len:425 (+),score=109.31,HMG_box|PF00505.15|1.3e-14,HMG_box_2|PF09011.6|9.8e-09 S_Transcript_133985:2-1276(+)
GTTACAGCCACTTTCAACTTTCCCTCCACAGCCACAAATGCCTCATTCGTGTTGCGCAAGTACTATTATTCACTGCTCCAGCATTATGAGCGAATCTACTACTTCAAAGCCCAGGCTTGGAATCCTTCATCTACTGGCATTTCACAAAGTCCGAACACCACCACTCCTGTTCCAGTTCATGGGTTTGCTAGAATGTCACCCTCACCTGTTCAAGTAGCAACTTCCCAGCCTCCGAGGATAAACACTATCGAGTTTGTATCTGGAGGTCTTAAAACTGCATCTGTTGATAATTCTGTTCCCATCTTATATGAATCTTCAGTGAAAATTTCATTATTACTACGCTATGCTGTCACTGATTTGCCTTCTGTTGTCGCAACTCCTGTAGCATCATCTGTTGGCTCTCCTGTTATTGGAGTGATAGATGGCAAGTTTGAAAGCGGTTATCTTGTTACTGTGACAATTGGCAAGGAGAAGCTGAAAGGGGTGCTCTATCAGCCTCCACCTGCTCCCAGTAGTCAAGGGCCGCAGACTTGTTCTGGTTTCTCGAGTGGCAAAACTGACAGCACTCCCACTACATCAGGTCTGCATCACAGGAGGAGGAGGAGGAAGAAATCCGAGATAAGAAAAAGGGATCCTGCTCACCCAAAGCCCAACAGAAGTGGGTACAATTTCTTCTTTGCTGAGCAACATTCCAGACTCAAACCACTGCATCCAGGGAAGGACCGTGAGATTAGTAGGATGATTGGTGAATTATGGAACAAATTGAAAGATAGTGAGAGATCGGTATATCAAGATAAGGCTATAAAGGATAAAGAAAGATACATGATGGAAATGGAGAGTTATCGAGAGAGATTGAAGGCTAATCAAGTCATAAGTGATGCAGTGCCCATACAGCAGAGGTTTCCTTATTTGGATGTGAATATGGTGGAAGTCGATGTGAAAGATGGGACAGAAAGGGATTCCCCAGAAACTGAAGATGAAGATGAGAGTGGTTCTAGTAAGTGTGATTCTGATGAGGACGATGATCATATGGTAGATTCAGACAATGATGAATATCCAGCAGAAGGCGTTGGGGTCAAATCAGGCAACCTAGGTGGTTTTGAAACTACAACAGCTGAAGGGGGATTCCAGGTGGAGTTTGTCAAGGAAGACGAAAAAACTTGTGACGAAAGTGAAGGGAGCTTGGGAGCTGCTACTCATACTGCTGGGGAGAGGAAGCAAAGTTCACCACCTGAGGCGCAACATCTCAACTCTGTCCCTTTTACTATGTCGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_133985.p1 GENE.S_Transcript_133985~~S_Transcript_133985.p1 ORF type:5prime_partial len:425 (+),score=109.31,HMG_box|PF00505.15|1.3e-14,HMG_box_2|PF09011.6|9.8e-09 S_Transcript_133985:2-1276(+)
VTATFNFPSTATNASFVLRKYYYSLLQHYERIYYFKAQAWNPSSTGISQSPNTTTPVPVHGFARMSPSPVQVATSQPPRINTIEFVSGGLKTASVDNSVPILYESSVKISLLLRYAVTDLPSVVATPVASSVGSPVIGVIDGKFESGYLVTVTIGKEKLKGVLYQPPPAPSSQGPQTCSGFSSGKTDSTPTTSGLHHRRRRRKKSEIRKRDPAHPKPNRSGYNFFFAEQHSRLKPLHPGKDREISRMIGELWNKLKDSERSVYQDKAIKDKERYMMEMESYRERLKANQVISDAVPIQQRFPYLDVNMVEVDVKDGTERDSPETEDEDESGSSKCDSDEDDDHMVDSDNDEYPAEGVGVKSGNLGGFETTTAEGGFQVEFVKEDEKTCDESEGSLGAATHTAGERKQSSPPEAQHLNSVPFTMS*

Click here to download the sequence:
Link to NCBI Protein BLAST