Transcript Information: S_Transcript_135359.p1


Annotated TAIR IDAT5G13190.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4204987-4206205 | Reverse length=134
E-Value3.6E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.903893325012
Replicate 218.759976749504
Replicate 320.541011446405
Condition 2: 8 Hour
Replicate 128.348722457506
Replicate 227.194522597991
Replicate 327.059638875785
Condition 3: 24 Hour
Replicate 115.304499211973
Replicate 218.321045286269
Replicate 314.347869571773


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_135359.p1 GENE.S_Transcript_135359~~S_Transcript_135359.p1 ORF type:complete len:167 (+),score=25.58,zf-LITAF-like|PF10601.5|1.3e-11 S_Transcript_135359:165-665(+)
ATGTCGAAGAATGAGGAACCTGTGATGGGGATACCCTACCCCGGCGCTGGAGGCTATCCGGCGGGCCCACCACCGGCAATGTACCCACCACAGCCTCATCCACAACCACAACAACAATACAACAACAACTATTACCATGTGGGTGAAAACCCTTATCAAGCAGGGATGATCCCTCCGAATGCCATATTTGGAGATCCAAAAGGGGTTCCCATTCATCAGACCTTCTACATGGATACTCCTGCTCCTTTCAATTGCGTTCACTGCGGCAACTCTGGCCTCACCACTCTCAAGTCAAAGCCTAGTCTGGCTGCAGTGGTTGGTTGTATGATGCCAATGATGCTAGGGGTTTGCTTTCTTTGCCCTTCCATGGACTGCCTTTGGCATAAGTATCATTACTGCCCTAGCTGTGGGGAAAAGGTTGCTGCTTTTGAGAAATCAGATCCTTGTGTCGTCATGGATCCGACCAATTGGGCACAAGAAAGTTTTGCATTGCGCAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_135359.p1 GENE.S_Transcript_135359~~S_Transcript_135359.p1 ORF type:complete len:167 (+),score=25.58,zf-LITAF-like|PF10601.5|1.3e-11 S_Transcript_135359:165-665(+)
MSKNEEPVMGIPYPGAGGYPAGPPPAMYPPQPHPQPQQQYNNNYYHVGENPYQAGMIPPNAIFGDPKGVPIHQTFYMDTPAPFNCVHCGNSGLTTLKSKPSLAAVVGCMMPMMLGVCFLCPSMDCLWHKYHYCPSCGEKVAAFEKSDPCVVMDPTNWAQESFALRS*

Click here to download the sequence:
Link to NCBI Protein BLAST