Transcript Information: S_Transcript_135367.p1


Annotated TAIR IDAT5G13190.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:4204987-4206205 | Reverse length=134
E-Value3.4E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.024204685816
Replicate 23.0085622123884
Replicate 35.8681432993274
Condition 2: 8 Hour
Replicate 11.9386718470121
Replicate 21.7795788690692
Replicate 33.8756086554511
Condition 3: 24 Hour
Replicate 14.4682716230761
Replicate 22.5754331336758
Replicate 38.3118100880496


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_135367.p1 GENE.S_Transcript_135367~~S_Transcript_135367.p1 ORF type:3prime_partial len:88 (+),score=13.46 S_Transcript_135367:125-385(+)
ATGAATGGGAACCCCTTTTGGATCTCCAAATATGGCATTTGGAGGGATCATCCCTGCTTGATAAGGGTTTTCACCCACATGGTAATAGTTGTTGTGGTTGTAGATGAGGCTGTGGTGGGTACATTGCCAGTGGTGGGCCCGCCGGATAGCCTCCGGCGCCGGGATAGGGGTAGGGTATCCCCTTCACAGGTTCCTCATTCTTCGACATCTTCTTCTATCTTCTTCTCTTTCGAAACCCGCCCTCCCTTTTTTCTCTCTCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_135367.p1 GENE.S_Transcript_135367~~S_Transcript_135367.p1 ORF type:3prime_partial len:88 (+),score=13.46 S_Transcript_135367:125-385(+)
MNGNPFWISKYGIWRDHPCLIRVFTHMVIVVVVVDEAVVGTLPVVGPPDSLRRRDRGRVSPSQVPHSSTSSSIFFSFETRPPFFLSL

Click here to download the sequence:
Link to NCBI Protein BLAST