Transcript Information: S_Transcript_13539.p1


Annotated TAIR IDAT1G80000.1
Annotated Gene NameCASC3/Barentsz eIF4AIII binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:30093195-30096742 | Forward length=605
E-Value9.6E-133
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.837870121748
Replicate 228.980782893346
Replicate 328.940508176385
Condition 2: 8 Hour
Replicate 133.28327161078
Replicate 232.230629396216
Replicate 331.793128631159
Condition 3: 24 Hour
Replicate 132.829033946317
Replicate 232.491198799425
Replicate 329.995708176706


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13539.p1 GENE.S_Transcript_13539~~S_Transcript_13539.p1 ORF type:5prime_partial len:708 (+),score=249.47,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|2.1e-17 S_Transcript_13539:3-2126(+)
TTTGGAATGGCTGGGGATGAAGAAGGACGACAACAAGAACAACAACAACAACAACAAGAACAAGAAGAAGAAGAGACAGAGTATGAGAGTGATCCAGAAGAGGCGAAGATGTCGTTGAAGATGCGAAGGAGAGAAGCCAGTGATGATGAAGACGAACATGAAAATGATGACGATGGTGATGCTAATGAAGATGACGATGAAGAGAAGAAGAAGAAGAAGAAAGTTGTAAGAGATGGAGGAGAGAGAGAGAAAGCGATTGTTGATTCGGATGGCGAATCGGACGGTCAAGGTGGAGCTGCTGAGTATGATGATGAAGGAGATGAAGAAGAAGAGGAGGAGTATTATGATGAGGAATATGAGGAAGAGGAGGAAGAGCTTTTTGATGAGGAGAGAAAAAGTGGTGGAGGTGATGTGGAGGTGGTGGTGAGGGCGAAGGCAGTGGAGGGCGAAGAAGACGAAGAGAAGAGAGAGAGTCAAGGGGAAGGTGAAGGTGAAGGAGGTGGTGAAGGTGCGGAGGAGAAGAAAGAGAATGAGCCGTTTGCCGTGCCGACTTCAGGTGCTTTTTATATGCATGATGATCGGTTTCGAGACAATGCTGCTGGTAGACACAGGAGGACATTTGGTGGTAGAAAATTATGGGAATCGAAGGATGAGAGGAAATGGGGCCATGACAAATTTGAGGAGATGAACATGCAGGAAAGGCATTATGAAGAGGGAAGGAAGTCTTCCAGAGGATTTTATCGAGGTCGTGGAAAAGGTAGAGGCACCGACCGTGGCTATGCTCGAGGGGGCAAGATGAGAGGATATGGTGGTAATAACAACCAAAATGCTTTACCTAAGGATGTGAGAGGAAGAGGGCATAGACGATATCAGCTTGCTATGAAGAACAAGAGTGAAACAGTCCCATCGCAAAACAAACAATCAGCAAAGTCAATTGAGAAAACTTCACATGCTGGTTCGGGGAGAGGTTCTGCTTCGATGACCAACTCAAATGTAGAACACGAGTCAGGTCCTGCCAAAAAAGTTGCCTCAAGCCTGAATTCTGCATCGCCTCCTTTTTATCCATCTGGTTCTTCCAGTAAGGATATTTCTTTGACACAGAAAAAGGAGGCACAATCTGGACATAATAATAACAGGAACTTTCGCCCCGCTGTTGTGGACCAGAACTTCTCTATGCCACTCTCAAATTCAATGATGCGAGGGAAGAATGTTGTCGATTCTATTGGTATGGACAAACTCCACATTGATGATTCTGTTCCTCCGGCCAGTGGAAGGCCTGTAAATAATGTGCATCAACCATCTGGTTCTTCATCATTGGGTGCTACTCAGATGCCTCAGGCCAGAGCTCGGGGTAGGGGTGTAGCTGTAACTGGTTCTCCCATGTTTCAGCCACCTCAAGCTAATAATCAAGTTAACAAAGTTCCTCCACCAGCTGCTCAATTTCCTCAGCGAAATCCTGTGCAAAACCGAGTTCAACCTCCTGTTCAGGCTCCAGCTCAGCTGGCAGGCCAGCGCTCCCTTGGTTCTTCACAGGGTTCTCCGCCAAAAGCAGGTTTGCCAATAAATGCATTTCAGCCTGGAGATGTTGAGTCTCCTGCGGAATCTGGTAAATCTAACACTGCTGTGGCTGGGAAAGGGAAAGGAACTGTCCAGGGAGCTGGACGGGGTTCGCTTATGTATACTGGTGGCCAAGTCATGGGATCGGGTGGAAATATGGGTGCTGGTCATGGTGACCCGAATCTTCCAGCCTTCTTCCCAGTTATGCAATTTGGGGCGCAGCATCCTGGTGGTATTGGAGTTCCTGCTGTTGGAATGGCATTTCCTGGATATGTTGCACAGCCCAATGGTTTGGGAAATTCTGAAATGACTTGGTTGCCAGTACTAGCAAGTGCAGCAGGTGCCTTGGGAGCCACATATTGTCCACCTTATCTTGCTGTTGATGGTGCTTATCCTCCTCGGCCAACAGGACAACCGTCTGCCTTGCCTGCCCCTAGCAAAGATAACAATCAGAGTAATCCTACTAGTGAAATGAAACCCCAGGCGAGATCTGAGGTTTCAAATGATGAGTTCAGCCAGAGACAAAATAAGCCTCGCAGATACTCGGAAATGAATTTTAGCCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13539.p1 GENE.S_Transcript_13539~~S_Transcript_13539.p1 ORF type:5prime_partial len:708 (+),score=249.47,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|1.6e+04,Btz|PF09405.6|2.1e-17 S_Transcript_13539:3-2126(+)
FGMAGDEEGRQQEQQQQQQEQEEEETEYESDPEEAKMSLKMRRREASDDEDEHENDDDGDANEDDDEEKKKKKKVVRDGGEREKAIVDSDGESDGQGGAAEYDDEGDEEEEEEYYDEEYEEEEEELFDEERKSGGGDVEVVVRAKAVEGEEDEEKRESQGEGEGEGGGEGAEEKKENEPFAVPTSGAFYMHDDRFRDNAAGRHRRTFGGRKLWESKDERKWGHDKFEEMNMQERHYEEGRKSSRGFYRGRGKGRGTDRGYARGGKMRGYGGNNNQNALPKDVRGRGHRRYQLAMKNKSETVPSQNKQSAKSIEKTSHAGSGRGSASMTNSNVEHESGPAKKVASSLNSASPPFYPSGSSSKDISLTQKKEAQSGHNNNRNFRPAVVDQNFSMPLSNSMMRGKNVVDSIGMDKLHIDDSVPPASGRPVNNVHQPSGSSSLGATQMPQARARGRGVAVTGSPMFQPPQANNQVNKVPPPAAQFPQRNPVQNRVQPPVQAPAQLAGQRSLGSSQGSPPKAGLPINAFQPGDVESPAESGKSNTAVAGKGKGTVQGAGRGSLMYTGGQVMGSGGNMGAGHGDPNLPAFFPVMQFGAQHPGGIGVPAVGMAFPGYVAQPNGLGNSEMTWLPVLASAAGALGATYCPPYLAVDGAYPPRPTGQPSALPAPSKDNNQSNPTSEMKPQARSEVSNDEFSQRQNKPRRYSEMNFSQ*

Click here to download the sequence:
Link to NCBI Protein BLAST