Transcript Information: S_Transcript_135415.p1


Annotated TAIR IDAT1G72270.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:27199733-27211122 | Reverse length=2845
E-Value5E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.985940907238
Replicate 211.250561562441
Replicate 38.1832007788162
Condition 2: 8 Hour
Replicate 110.35670169927
Replicate 210.815529474835
Replicate 38.3757635180721
Condition 3: 24 Hour
Replicate 18.9694223603764
Replicate 29.5558234240229
Replicate 310.968527037104


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_135415.p1 GENE.S_Transcript_135415~~S_Transcript_135415.p1 ORF type:complete len:453 (+),score=90.71,DDE_Tnp_4|PF13359.2|3.2e+03,DDE_Tnp_4|PF13359.2|6.7e-17 S_Transcript_135415:245-1603(+)
ATGGCTGCCACTCCTAAACCAACATCTTCTGCTCCCACCACTAAAAAACCCCGTTCCACCAAACGCAAACCCAAACGCCACCACCACGACGACAACCACAACACCATCACCACCACCGCCACCGCCACCGCCACTGTCTCTTCCCTCATCCCCACCATAACATATGCACTCTCCCACACTCAATCCTTCACTCTCAACCATGACCTTCAACTCCTCCCTTCTCAATCGCTTACCCTTGAATCTTCCCTTCATTCTGCTTCCTTTTACCTTTCAAAGATCCAAACTTTACTCAAAATCAAACAACCCCAACAAATCCCATTTCCTATTTCTCCTTATTCTAATTGTTGGTTTGAAAGATTTCTCCTTTCTGCCTCAATAGAACAAGACCCCAGGTGGATTCAAACTTTTAGGATGTCAAAGCCCACTTTTTTACTCCTTAATGCTATTCTTTCCCACTATTTATCCTCTTCAATTCCCTCTATTTCCCCCAATTTTGCTCTTGGTGCTGCTCTTTATAGGCTTGCTCATAACGGGTCATTCTCTTCTGTTGGTAAAAGATTTGGGATTTCCTCACAAGATGCTTGTAGAGCTTTTTATGCTGTTTGTAAGGTGGTTTGTGATCAATTGGGTGGTTATTTGGGTGATTTTGGGTCTGAAATGGGGAGAATTTTGGTGGGGTTTGAGGGGATTTCTTTGCCTAATTGTTGTGGGGTTTTAGGTTCTGGGAAATTCCCAGTTGAAGGGGGGGTTTTGGGGGAAAATGGGTTTTTGATGGTTCAAGCTTTGGTTGATTCAGATGGGAGATTCTTAGATGTTTCTGCTGGTTGGCCTAGTACATTTAAACCTGATTTGGTTTTACAGCAAACAAGGCTTTTTTCAGGTGTTGAGGAATCTAAGGAGCTCTTGAATGGTTTGGCTTTAGAGATAAGTGATGGGATTTTGGTGCCACAATACATTTTGGGAGATTGTTGTTACCCTCTTTTCCCTTGGCTTTTAACCCCATTTTTAAAGAGGGGTGAAGGAGATGATTTGAGCTTAAAAGAGAAGGTTTTCAATGAAGTGCATAAGAGGGCAATGGGGTTTGTTGTAGTGGCATTTGGGAGGGTTAGAGCTAATTGGAAGCTGCTTAATAGGAGTTGGAAAGAGGATTGTATTGAGTTCTTACCCTTCGTTATAACCACAGCTTGTTTGCTGAATAACTTCCTGATGAAGCATGGTGAGAAGCTATTGGATGGAGAGCCGGGGCTGTTTGTTGAGGCGCAGGATATGCCGGTTTATGATGGAGAGACGAATGAGAGCGCAGGGAAGACTAGGGACTTGCTAGCATCATATCTTAGCTTGGTAAGACAAAGAGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_135415.p1 GENE.S_Transcript_135415~~S_Transcript_135415.p1 ORF type:complete len:453 (+),score=90.71,DDE_Tnp_4|PF13359.2|3.2e+03,DDE_Tnp_4|PF13359.2|6.7e-17 S_Transcript_135415:245-1603(+)
MAATPKPTSSAPTTKKPRSTKRKPKRHHHDDNHNTITTTATATATVSSLIPTITYALSHTQSFTLNHDLQLLPSQSLTLESSLHSASFYLSKIQTLLKIKQPQQIPFPISPYSNCWFERFLLSASIEQDPRWIQTFRMSKPTFLLLNAILSHYLSSSIPSISPNFALGAALYRLAHNGSFSSVGKRFGISSQDACRAFYAVCKVVCDQLGGYLGDFGSEMGRILVGFEGISLPNCCGVLGSGKFPVEGGVLGENGFLMVQALVDSDGRFLDVSAGWPSTFKPDLVLQQTRLFSGVEESKELLNGLALEISDGILVPQYILGDCCYPLFPWLLTPFLKRGEGDDLSLKEKVFNEVHKRAMGFVVVAFGRVRANWKLLNRSWKEDCIEFLPFVITTACLLNNFLMKHGEKLLDGEPGLFVEAQDMPVYDGETNESAGKTRDLLASYLSLVRQRD*

Click here to download the sequence:
Link to NCBI Protein BLAST