Transcript Information: S_Transcript_135695.p1


Annotated TAIR IDAT5G17200.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5653524-5655336 | Reverse length=421
E-Value4E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.70653985580125
Replicate 21.4643444396581
Replicate 33.5906211844178
Condition 2: 8 Hour
Replicate 10.56616080487964
Replicate 21.5838476913081
Replicate 31.5090865561049
Condition 3: 24 Hour
Replicate 12.2231518596622
Replicate 20.60169411264639
Replicate 30.89281573115455


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_135695.p1 GENE.S_Transcript_135695~~S_Transcript_135695.p1 ORF type:complete len:226 (+),score=6.59,Glyco_hydro_28|PF00295.13|7.3e-12,Pectate_lyase_3|PF12708.3|3e-07 S_Transcript_135695:344-1021(+)
ATGCACATTCAACATACCAAAGTGGTTAAAAAGGAGGCTGTGGTGAACAATATGATCTGTAGGAATACTTTGTTATCTTTCTTTTTATTCAGCAACATTATAGTAGCTTCAAGTCGTCATTGTCCTAGTTCAAGTACCGACTCTTGTGTGGCTAATGTGATGGATTATGGGGCAGTTGGAGATGGTAAAACCGATGACTCTAAGGCTTTCCTCAAGGCTTGGGGTGATGTATGCAATAGTAAAAAAGGAGCTTTGGTTTATTTAGTACCAAAAGGCAAGAAATTCTTGTTAAAACCAATATTGTTCCAAGGTCCATGCAAGTCTTCATCAATCCAAGTTGAGATACTTGGAAAACTTGTAGCACCAAAGCATAACGAGTGGACCAATTGCCAAAGTACTTGGCTTTATTTTACAAATATACAAGGTCTCAATATTAATGGATCGGGCCATATTGACGGTCAAGGTTCAACTTGGTGGGGAAATGCTCAGACGAATTGTAACCACCCTACGGTAAGGATTTTTATCTCTCGAGTAACTTTTATTTTGTATCACATATGTCTATATTTTAATCAAGGATGTTTTGGTCTAGTGATTAAAACTGAGATTCCCAGTACATTAGATACTGGGTTCGATTCCCCCTCCCATATTATTGTAAATTATAATTATGATTGTAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_135695.p1 GENE.S_Transcript_135695~~S_Transcript_135695.p1 ORF type:complete len:226 (+),score=6.59,Glyco_hydro_28|PF00295.13|7.3e-12,Pectate_lyase_3|PF12708.3|3e-07 S_Transcript_135695:344-1021(+)
MHIQHTKVVKKEAVVNNMICRNTLLSFFLFSNIIVASSRHCPSSSTDSCVANVMDYGAVGDGKTDDSKAFLKAWGDVCNSKKGALVYLVPKGKKFLLKPILFQGPCKSSSIQVEILGKLVAPKHNEWTNCQSTWLYFTNIQGLNINGSGHIDGQGSTWWGNAQTNCNHPTVRIFISRVTFILYHICLYFNQGCFGLVIKTEIPSTLDTGFDSPSHIIVNYNYDCN*

Click here to download the sequence:
Link to NCBI Protein BLAST